Feature identity
- Identifier
- PaHa05g25000.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 3,300 bp
- Genomic location
- 5:68,213,537–68,250,445
- Strand
- −
Hass · mRNA
PaHa05g25000.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 3,300
- bp
- 5:68,213,537–68,250,445
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa05g25000
- eggNOG
- Preferred name: VIP6 | Seed ortholog: 337451.A0A3S3NM86 | COG: COG4783 | eggNOG OG: TPR_7@131567|G-3, TPR_8@131567|oY-16
- Gene Ontology
- GO:0000993 RNA polymerase II complex binding; GO:0003674 molecular_function; GO:0003712 transcription coregulator activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009910 negative regulation of flower development; GO:0016593 Cdc73/Paf1 complex; GO:0042169 SH2 domain binding; GO:0045142 triplex DNA binding; GO:0045893 positive regulation of DNA-templated transcription; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding; GO:1990269 RNA polymerase II C-terminal domain phosphoserine binding
- KEGG
- KO: K15176 | Pathway: 05160 | BRITE: 00001, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa05g25000.1-protein
derives_frommRNAPaHa05g25000.1
mRNAPaHa05g25000.1
part_ofgenePaHa05g25000
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68213537..68213761mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68217890..68218192mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68218670..68218741mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68218853..68219119mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68222471..68222695mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68222806..68222913mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68223002..68223103mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68225582..68225677mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68225828..68225986mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68226131..68226211mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68227695..68227961mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68228218..68228310mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68230914..68230982mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68232558..68232650mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68232762..68232862mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68242158..68242242mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68242342..68242556mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68242699..68242762mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68242892..68243008mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68243182..68243235mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68245779..68245879mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68247399..68247593mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68247803..68247869mRNAPaHa05g25000.1
CDS
part_ofPaHa05g25000.1-CDS-5-1787993825:68250305..68250445mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68213537..68213761mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68217890..68218192mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68218670..68218741mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68218853..68219119mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68222471..68222695mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68222806..68222913mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68223002..68223103mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68225582..68225677mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68225828..68225986mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68226131..68226211mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68227695..68227961mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68228218..68228310mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68230914..68230982mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68232558..68232650mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68232762..68232862mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68242158..68242242mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68242342..68242556mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68242699..68242762mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68242892..68243008mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68243182..68243235mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68245779..68245879mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68247399..68247593mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68247803..68247869mRNAPaHa05g25000.1
exon
part_ofPaHa05g25000.1-exon-5-1787993825:68250305..68250445mRNAPaHa05g25000.1
