Persea americana — Hass
Hass
HiFiAsm Gr80 genome assembly
- Genes
- 42,442
- mRNAs
- 42,442
- Proteins
- 42,442
- ID prefix
- PaHa
Project scope
Three avocado genomes, one connected resource
PerseaDB integrates the Hass, West Indian T2T, and Anise avocado genomes, connecting assemblies and structural annotations to searchable biological records, sequences, and visual analysis tools.
- 3
- genome collections
- 133,540
- genes
- 145,740
- mRNAs
Current coverage
Datasets available today
The figures below describe content already integrated into the public database. Each collection can be searched as biological records and explored with the available sequence and genome-browser tools.
Persea americana — West Indian
West Indian T2T
Complete assembly represented by 12 chromosomes
- Genes
- 40,629
- mRNAs
- 52,829
- Proteins
- 52,829
- ID prefix
- Pa
Persea americana — Anise
Anise
Assembly represented by 12 chromosomes and 295 scaffolds
- Genes
- 50,469
- mRNAs
- 50,469
- Proteins
- 50,469
- ID prefix
- Chr / scaffold
Platform coverage
From source files to interactive biology
PerseaDB separates source datasets, normalized biological records, and analysis interfaces so that each layer can be checked, updated, and extended independently.
Integrated records
Genome FASTA and GFF3 annotations are represented as organism, gene, mRNA, CDS, protein, coordinate, sequence, and relationship records in Tripal and Chado.
Search and relationships
Published genes, transcripts, proteins, and organisms can be searched, opened as full records, and followed through Gene–mRNA–CDS–protein relationships.
Sequence analysis
Separate nucleotide and protein collections support genome, mRNA, CDS, and protein BLAST searches against the published avocado datasets.
Genome exploration
JBrowse provides interactive assembly navigation and structural-annotation tracks for Hass, West Indian T2T, and Anise.
Transcriptomics results
Cultivar-specific collections organize quality control, differential expression, response comparison, clustering, and enrichment figures.
Comparative genomics
Precomputed results connect 21,990 core Orthogroups, 17,730 coordinate-resolved one-to-one anchors, chromosome synteny, structural variation, and Lauraceae ancestral-chromosome reconstruction. The public explorer browses validated results; it does not rerun whole-genome alignment online.
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