Hass · mRNA

PaHa03g07970.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

933
bp
3:15,469,171–15,470,661
genomic location
Record overview

Feature identity

Identifier
PaHa03g07970.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
933 bp
Genomic location
3:15,469,171–15,470,661
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC110793892 | Seed ortholog: 337451.A0A443NBJ1 | COG: S | eggNOG OG: Myb_DNA-binding@131567|AOS-27, Myb_DNA-binding@33090|FSl-38, Myb_DNA-binding@3398|PIe-47, Myb_DNA-binding@35493|KPp-43
Gene Ontology
GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0009409 response to cold; GO:0009411 response to UV; GO:0009414 response to water deprivation; GO:0009416 response to light stimulus; GO:0009637 response to blue light; GO:0009646 response to absence of light; GO:0009651 response to salt stress; GO:0009733 response to auxin; GO:0009737 response to abscisic acid; GO:0009744 response to sucrose; GO:0010118 stomatal movement; GO:0043565 sequence-specific DNA binding; GO:0045893 positive regulation of DNA-templated transcription; GO:0080148 negative regulation of response to water deprivation; GO:1901141 regulation of lignin biosynthetic process; GO:1902074 response to salt
KEGG
KO: K09422 | BRITE: 00001, 03000
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa03g07970.1-CDS-3-1787993825:15469171..15469303
part_of
CDSPaHa03g07970.1-CDS-3-1787993825:15469602..15469731
part_of
CDSPaHa03g07970.1-CDS-3-1787993825:15469992..15470661
part_of
exonPaHa03g07970.1-exon-3-1787993825:15469171..15469303
part_of
exonPaHa03g07970.1-exon-3-1787993825:15469602..15469731
part_of
exonPaHa03g07970.1-exon-3-1787993825:15469992..15470661
part_of