Hass · gene

PaHa03g30710

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

10,881
bp
3:80,446,532–80,473,755
genomic location
Record overview

Feature identity

Identifier
PaHa03g30710
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
10,881 bp
Genomic location
3:80,446,532–80,473,755
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC109021170 | Seed ortholog: 337451.A0A3S3NXX5 | COG: COG2239 | eggNOG OG: DUF908@2759|A-1, DUF908@3193|Cv-12, DUF913@2759|A-1, DUF913@3193|IL-14, HECT@131567|A-1*, HECT@2759|ep-22, HECT@3193|BOF-31, UBA@131567|Dj-15, UBA@3193|VH-25, UBM@131567|G-3, UBM@3193|MG-18
Gene Ontology
GO:0000139 Golgi membrane; GO:0000209 protein polyubiquitination; GO:0000278 mitotic cell cycle; GO:0000447 endonucleolytic cleavage in ITS1 to separate SSU-rRNA from 5.8S rRNA and LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000448 cleavage in ITS2 between 5.8S rRNA and LSU-rRNA of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000472 endonucleolytic cleavage to generate mature 5'-end of SSU-rRNA from (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0000480 endonucleolytic cleavage in 5'-ETS of tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA); GO:0001947 heart looping; GO:0003190 atrioventricular valve formation; GO:0003208 cardiac ventricle morphogenesis; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003723 RNA binding; GO:0004842 ubiquitin-protein transferase activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005576 extracellular region; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005783 endoplasmic reticulum; GO:0005829 cytosol; GO:0006284 base-excision repair; GO:0006364 rRNA processing; GO:0006511 ubiquitin-dependent protein catabolic process; GO:0006513 protein monoubiquitination; GO:0006913 nucleocytoplasmic transport; GO:0006997 nucleus organization; GO:0007030 Golgi organization; GO:0007249 canonical NF-kappaB signal transduction; GO:0007431 salivary gland development; GO:0008150 biological_process; GO:0008361 regulation of cell size; GO:0010637 negative regulation of mitochondrial fusion; GO:0010804 negative regulation of tumor necrosis factor-mediated signaling pathway; GO:0016020 membrane; GO:0016567 protein ubiquitination; GO:0016601 Rac protein signal transduction; GO:0016604 nuclear body; GO:0030178 negative regulation of Wnt signaling pathway; GO:0030334 regulation of cell migration; GO:0031149 sorocarp stalk cell differentiation; GO:0031267 small GTPase binding; GO:0031398 positive regulation of protein ubiquitination; GO:0031965 nuclear membrane; GO:0032922 circadian regulation of gene expression; GO:0034450 ubiquitin-ubiquitin ligase activity; GO:0034774 secretory granule lumen; GO:0035357 peroxisome proliferator activated receptor signaling pathway; GO:0035359 negative regulation of peroxisome proliferator activated receptor signaling pathway; GO:0042331 phototaxis; GO:0042742 defense response to bacterium; GO:0043069 negative regulation of programmed cell death; GO:0043123 positive regulation of canonical NF-kappaB signal transduction; GO:0043124 negative regulation of canonical NF-kappaB signal transduction; GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process; GO:0046329 negative regulation of JNK cascade; GO:0050770 regulation of axonogenesis; GO:0060322 head development; GO:0061025 membrane fusion; GO:0061630 ubiquitin protein ligase activity; GO:0070062 extracellular exosome; GO:0070936 protein K48-linked ubiquitination; GO:0090090 negative regulation of canonical Wnt signaling pathway; GO:0097225 sperm midpiece; GO:0097228 sperm principal piece; GO:0097229 sperm end piece; GO:0140852 histone ubiquitin ligase activity; GO:0141198 protein branched polyubiquitination; GO:1903427 negative regulation of reactive oxygen species biosynthetic process; GO:1903749 positive regulation of protein localization to mitochondrion; GO:1904813 ficolin-1-rich granule lumen; GO:1905091 positive regulation of type 2 mitophagy
KEGG
EC: ec:2.3.2.26 | KO: K10592 | Pathway: 04120 | BRITE: 00001, 01000, 04121
Biological context

Connected feature records

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