Hass · gene

PaHa03g19680

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

543
bp
3:61,085,615–61,086,157
genomic location
Record overview

Feature identity

Identifier
PaHa03g19680
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
543 bp
Genomic location
3:61,085,615–61,086,157
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104599016 | Seed ortholog: 337451.A0A3S3MMU1 | COG: COG2036 | eggNOG OG: CBFD_NFYB_HMF@131567|BS-10, CBFD_NFYB_HMF@2759|GM-15, CBFD_NFYB_HMF@3398|BqF-32
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000785 chromatin; GO:0000976 transcription cis-regulatory region binding; GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific; GO:0001217 DNA-binding transcription repressor activity; GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003677 DNA binding; GO:0003682 chromatin binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005667 transcription regulator complex; GO:0005721 pericentric heterochromatin; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006109 regulation of carbohydrate metabolic process; GO:0006351 DNA-templated transcription; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006366 transcription by RNA polymerase II; GO:0009408 response to heat; GO:0009414 response to water deprivation; GO:0009738 abscisic acid-activated signaling pathway; GO:0009785 blue light signaling pathway; GO:0009793 embryo development ending in seed dormancy; GO:0009888 tissue development; GO:0010262 somatic embryogenesis; GO:0010468 regulation of gene expression; GO:0016602 CCAAT-binding factor complex; GO:0019760 glucosinolate metabolic process; GO:0031934 mating-type region heterochromatin; GO:0032993 protein-DNA complex; GO:0040029 epigenetic regulation of gene expression; GO:0043066 negative regulation of apoptotic process; GO:0043204 perikaryon; GO:0043410 positive regulation of MAPK cascade; GO:0043457 regulation of cellular respiration; GO:0043565 sequence-specific DNA binding; GO:0043708 cell adhesion involved in biofilm formation; GO:0044877 protein-containing complex binding; GO:0045678 positive regulation of R7 cell differentiation; GO:0045723 positive regulation of fatty acid biosynthetic process; GO:0045892 negative regulation of DNA-templated transcription; GO:0045893 positive regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0048579 negative regulation of long-day photoperiodism, flowering; GO:0048749 compound eye development; GO:0051512 positive regulation of unidimensional cell growth; GO:0060237 regulation of fungal-type cell wall organization; GO:0071280 cellular response to copper ion; GO:0071466 cellular response to xenobiotic stimulus; GO:0090575 RNA polymerase II transcription regulator complex; GO:0140185 siRNA-mediated silent mating type cassette region heterochromatin formation; GO:0140297 DNA-binding transcription factor binding; GO:1990830 cellular response to leukemia inhibitory factor
KEGG
EC: ec:6.5.1.3 | KO: K08065 | Pathway: 04612, 05152, 05166 | BRITE: 00001, 03000
Biological context

Connected feature records

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