Feature identity
- Identifier
- PaHa03g03500.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 996 bp
- Genomic location
- 3:7,293,405–7,298,268
- Strand
- +
Hass · mRNA
PaHa03g03500.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 996
- bp
- 3:7,293,405–7,298,268
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa03g03500
- eggNOG
- Preferred name: CCR1 | Seed ortholog: 337451.A0A443NA91 | COG: COG0451 | eggNOG OG: Epimerase@131567|KJ-12, Epimerase@3398|TBg-32, Epimerase@58023|MrT-29
- Gene Ontology
- GO:0005575 cellular_component; GO:0005737 cytoplasm; GO:0007623 circadian rhythm; GO:0009409 response to cold; GO:0009699 phenylpropanoid biosynthetic process; GO:0009809 lignin biosynthetic process; GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor; GO:0016621 cinnamoyl-CoA reductase (NADP+) activity; GO:0042754 negative regulation of circadian rhythm
- KEGG
- EC: ec:1.2.1.44 | KO: K09753 | Pathway: 00940, 01100, 01110 | Module: M00039 | BRITE: 00001, 01000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa03g03500.1-protein
derives_frommRNAPaHa03g03500.1
mRNAPaHa03g03500.1
part_ofgenePaHa03g03500
CDS
part_ofPaHa03g03500.1-CDS-3-1787993825:7293405..7293537mRNAPaHa03g03500.1
CDS
part_ofPaHa03g03500.1-CDS-3-1787993825:7293945..7294285mRNAPaHa03g03500.1
CDS
part_ofPaHa03g03500.1-CDS-3-1787993825:7294451..7294803mRNAPaHa03g03500.1
CDS
part_ofPaHa03g03500.1-CDS-3-1787993825:7298100..7298268mRNAPaHa03g03500.1
exon
part_ofPaHa03g03500.1-exon-3-1787993825:7293405..7293537mRNAPaHa03g03500.1
exon
part_ofPaHa03g03500.1-exon-3-1787993825:7293945..7294285mRNAPaHa03g03500.1
exon
part_ofPaHa03g03500.1-exon-3-1787993825:7294451..7294803mRNAPaHa03g03500.1
exon
part_ofPaHa03g03500.1-exon-3-1787993825:7298100..7298268mRNAPaHa03g03500.1
