Feature identity
- Identifier
- PaHa03g08370
- Feature type
- gene
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 4,050 bp
- Genomic location
- 3:16,332,409–16,337,434
- Strand
- +
Hass · gene
PaHa03g08370
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 4,050
- bp
- 3:16,332,409–16,337,434
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
- eggNOG
- Preferred name: LOC104598042 | Seed ortholog: 337451.A0A443NBK9 | COG: S | eggNOG OG: SF3b1@2759|A-1
- Gene Ontology
- GO:0000245 spliceosomal complex assembly; GO:0000375 RNA splicing, via transesterification reactions; GO:0000387 spliceosomal snRNP assembly; GO:0000388 spliceosome conformational change to release U4 (or U4atac) and U1 (or U11); GO:0000398 mRNA splicing, via spliceosome; GO:0000785 chromatin; GO:0001825 blastocyst formation; GO:0003682 chromatin binding; GO:0003723 RNA binding; GO:0003729 mRNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005681 spliceosomal complex; GO:0005684 U2-type spliceosomal complex; GO:0005686 U2 snRNP; GO:0005689 U12-type spliceosomal complex; GO:0005730 nucleolus; GO:0006338 chromatin remodeling; GO:0008150 biological_process; GO:0008380 RNA splicing; GO:0009952 anterior/posterior pattern specification; GO:0010629 negative regulation of gene expression; GO:0014032 neural crest cell development; GO:0016363 nuclear matrix; GO:0016607 nuclear speck; GO:0030318 melanocyte differentiation; GO:0030532 small nuclear ribonucleoprotein complex; GO:0034693 U11/U12 snRNP; GO:0036002 pre-mRNA binding; GO:0042981 regulation of apoptotic process; GO:0045292 mRNA cis splicing, via spliceosome; GO:0045943 positive regulation of transcription by RNA polymerase I; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0045945 positive regulation of transcription by RNA polymerase III; GO:0060216 definitive hemopoiesis; GO:0060218 hematopoietic stem cell differentiation; GO:0061515 myeloid cell development; GO:0071005 U2-type precatalytic spliceosome; GO:0071006 U2-type catalytic step 1 spliceosome; GO:0071011 precatalytic spliceosome; GO:0071013 catalytic step 2 spliceosome; GO:0071014 post-mRNA release spliceosomal complex; GO:0071016 U12-type precatalytic spliceosome; GO:0071018 U12-type catalytic step 2 spliceosome; GO:0110016 B-WICH complex; GO:0140727 siRNA-mediated pericentric heterochromatin formation; GO:1903241 U2-type prespliceosome assembly; GO:1990935 splicing factor binding
- KEGG
- KO: K12828 | Pathway: 03040 | BRITE: 00001, 03036, 03041
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
mRNAPaHa03g08370.1
part_ofgenePaHa03g08370
