Feature identity
- Identifier
- PaHa02g44180.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 627 bp
- Genomic location
- 2:102,080,240–102,083,147
- Strand
- −
Hass · mRNA
PaHa02g44180.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 627
- bp
- 2:102,080,240–102,083,147
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g44180
- eggNOG
- Preferred name: LOC104611090 | Seed ortholog: 337451.A0A443N9D7 | COG: S | eggNOG OG: Myb_DNA-binding@131567|AhB-29, Myb_DNA-binding@33090|IFL-41, Myb_DNA-binding@3398|JGJ-42
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009414 response to water deprivation; GO:0009737 response to abscisic acid; GO:0009834 plant-type secondary cell wall biogenesis; GO:1901347 negative regulation of secondary cell wall biogenesis; GO:1901348 positive regulation of secondary cell wall biogenesis; GO:1902074 response to salt; GO:2000652 regulation of secondary cell wall biogenesis
- KEGG
- KO: K09422 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g44180.1-protein
derives_frommRNAPaHa02g44180.1
mRNAPaHa02g44180.1
part_ofgenePaHa02g44180
CDS
part_ofPaHa02g44180.1-CDS-2-1787993825:102080240..102080328mRNAPaHa02g44180.1
CDS
part_ofPaHa02g44180.1-CDS-2-1787993825:102082330..102082752mRNAPaHa02g44180.1
CDS
part_ofPaHa02g44180.1-CDS-2-1787993825:102083033..102083147mRNAPaHa02g44180.1
exon
part_ofPaHa02g44180.1-exon-2-1787993825:102080240..102080328mRNAPaHa02g44180.1
exon
part_ofPaHa02g44180.1-exon-2-1787993825:102082330..102082752mRNAPaHa02g44180.1
exon
part_ofPaHa02g44180.1-exon-2-1787993825:102083033..102083147mRNAPaHa02g44180.1
