Hass · mRNA

PaHa02g42630.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

864
bp
2:100,136,008–100,137,632
genomic location
Record overview

Feature identity

Identifier
PaHa02g42630.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
864 bp
Genomic location
2:100,136,008–100,137,632
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC104605071 | Seed ortholog: 337451.A0A3S3PWW1 | COG: S | eggNOG OG: Myb_DNA-binding@131567|AOS-27, Myb_DNA-binding@1437183|YLB-54, Myb_DNA-binding@3193|LZe-44, Myb_DNA-binding@33090|Eca-37
Gene Ontology
GO:0000976 transcription cis-regulatory region binding; GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0009094 L-phenylalanine biosynthetic process; GO:0009642 response to light intensity; GO:0045892 negative regulation of DNA-templated transcription; GO:0045893 positive regulation of DNA-templated transcription; GO:1901002 positive regulation of response to salt stress; GO:1901141 regulation of lignin biosynthetic process; GO:2000652 regulation of secondary cell wall biogenesis; GO:2000762 regulation of phenylpropanoid metabolic process
KEGG
KO: K09422 | BRITE: 00001, 03000
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa02g42630.1-CDS-2-1787993825:100136008..100136608
part_of
CDSPaHa02g42630.1-CDS-2-1787993825:100136789..100136918
part_of
CDSPaHa02g42630.1-CDS-2-1787993825:100137500..100137632
part_of
exonPaHa02g42630.1-exon-2-1787993825:100136008..100136608
part_of
exonPaHa02g42630.1-exon-2-1787993825:100136789..100136918
part_of
exonPaHa02g42630.1-exon-2-1787993825:100137500..100137632
part_of