Feature identity
- Identifier
- PaHa02g42560.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 207 bp
- Genomic location
- 2:100,020,867–100,024,746
- Strand
- +
Hass · mRNA
PaHa02g42560.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 207
- bp
- 2:100,020,867–100,024,746
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g42560
- eggNOG
- Preferred name: ATR3 | Seed ortholog: 218851.A0A2G5F6F4 | COG: S | eggNOG OG: FAD_binding_1@131567|N-4, Flavodoxin_1@131567|Aw-10, Flavodoxin_1@2759|Gl-14, NAD_binding_1@131567|Ip-13, NAD_binding_1@2759|PH-15
- Gene Ontology
- GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0009793 embryo development ending in seed dormancy; GO:0016651 oxidoreductase activity, acting on NAD(P)H
- KEGG
- EC: ec:1.6.2.4 | KO: K00327 | BRITE: 00001, 01000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g42560.1-protein
derives_frommRNAPaHa02g42560.1
mRNAPaHa02g42560.1
part_ofgenePaHa02g42560
CDS
part_ofPaHa02g42560.1-CDS-2-1787993825:100020867..100020950mRNAPaHa02g42560.1
CDS
part_ofPaHa02g42560.1-CDS-2-1787993825:100021412..100021489mRNAPaHa02g42560.1
CDS
part_ofPaHa02g42560.1-CDS-2-1787993825:100024702..100024746mRNAPaHa02g42560.1
exon
part_ofPaHa02g42560.1-exon-2-1787993825:100020867..100020950mRNAPaHa02g42560.1
exon
part_ofPaHa02g42560.1-exon-2-1787993825:100021412..100021489mRNAPaHa02g42560.1
exon
part_ofPaHa02g42560.1-exon-2-1787993825:100024702..100024746mRNAPaHa02g42560.1
