Feature identity
- Identifier
- PaHa02g41720.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,167 bp
- Genomic location
- 2:98,679,263–98,680,961
- Strand
- −
Hass · mRNA
PaHa02g41720.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,167
- bp
- 2:98,679,263–98,680,961
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g41720
- eggNOG
- Preferred name: COL16 | Seed ortholog: 337451.A0A443N8T3 | COG: S | eggNOG OG: CCT@131567|A-1*, CCT@2759|JI-12, CCT@3398|Ars-25, zf-B_box@2759|B-2!, zf-B_box@35493|AB-8
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0006355 regulation of DNA-templated transcription; GO:0009408 response to heat; GO:0009641 shade avoidance; GO:0010223 secondary shoot formation; GO:0045893 positive regulation of DNA-templated transcription
- KEGG
- KO: K12135 | Pathway: 04712 | BRITE: 00001
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g41720.1-protein
derives_frommRNAPaHa02g41720.1
mRNAPaHa02g41720.1
part_ofgenePaHa02g41720
CDS
part_ofPaHa02g41720.1-CDS-2-1787993825:98679263..98679508mRNAPaHa02g41720.1
CDS
part_ofPaHa02g41720.1-CDS-2-1787993825:98680041..98680961mRNAPaHa02g41720.1
exon
part_ofPaHa02g41720.1-exon-2-1787993825:98679263..98679508mRNAPaHa02g41720.1
exon
part_ofPaHa02g41720.1-exon-2-1787993825:98680041..98680961mRNAPaHa02g41720.1
