Feature identity
- Identifier
- PaHa02g40260.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 327 bp
- Genomic location
- 2:96,329,800–96,330,126
- Strand
- +
Hass · mRNA
PaHa02g40260.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 327
- bp
- 2:96,329,800–96,330,126
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g40260
- eggNOG
- Preferred name: LOC107783433 | Seed ortholog: 337451.A0A3S4NR68 | COG: S | eggNOG OG: zf-C3HC4_2@131567|A-1*, zf-C3HC4_2@1437183|FLM-34, zf-C3HC4_2@2759|os-18
- Gene Ontology
- GO:0000139 Golgi membrane; GO:0004842 ubiquitin-protein transferase activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005654 nucleoplasm; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006511 ubiquitin-dependent protein catabolic process; GO:0008150 biological_process; GO:0008270 zinc ion binding; GO:0010212 response to ionizing radiation; GO:0031464 Cul4A-RING E3 ubiquitin ligase complex; GO:0032436 positive regulation of proteasomal ubiquitin-dependent protein catabolic process; GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process; GO:0045717 negative regulation of fatty acid biosynthetic process; GO:0061630 ubiquitin protein ligase activity
- KEGG
- EC: ec:2.3.2.27 | KO: K10143 | Pathway: 04120, 04712 | BRITE: 00001, 01000, 04121
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g40260.1-protein
derives_frommRNAPaHa02g40260.1
mRNAPaHa02g40260.1
part_ofgenePaHa02g40260
CDS
part_ofPaHa02g40260.1-CDS-2-1787993825:96329800..96330126mRNAPaHa02g40260.1
exon
part_ofPaHa02g40260.1-exon-2-1787993825:96329800..96330126mRNAPaHa02g40260.1
