Hass · gene

PaHa01g20670

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

378
bp
1:38,610,454–38,611,895
genomic location
Record overview

Feature identity

Identifier
PaHa01g20670
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
378 bp
Genomic location
1:38,610,454–38,611,895
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC103704753 | Seed ortholog: 337451.A0A3S3NR24 | COG: S | eggNOG OG: STAR_dimer@2759|A-1, STAR_dimer@35493|V-6
Gene Ontology
GO:0000381 regulation of alternative mRNA splicing, via spliceosome; GO:0001570 vasculogenesis; GO:0003713 transcription coactivator activity; GO:0003723 RNA binding; GO:0003727 single-stranded RNA binding; GO:0003729 mRNA binding; GO:0003730 mRNA 3'-UTR binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006397 mRNA processing; GO:0007155 cell adhesion; GO:0007284 spermatogonial cell division; GO:0007286 spermatid development; GO:0007438 oenocyte development; GO:0007475 apposition of dorsal and ventral imaginal disc-derived wing surfaces; GO:0007498 mesoderm development; GO:0007517 muscle organ development; GO:0007519 skeletal muscle tissue development; GO:0007521 muscle cell fate determination; GO:0007525 somatic muscle development; GO:0008016 regulation of heart contraction; GO:0008078 mesodermal cell migration; GO:0008266 poly(U) RNA binding; GO:0008298 intracellular mRNA localization; GO:0008347 glial cell migration; GO:0008366 axon ensheathment; GO:0008589 regulation of smoothened signaling pathway; GO:0010468 regulation of gene expression; GO:0010608 post-transcriptional regulation of gene expression; GO:0010628 positive regulation of gene expression; GO:0010629 negative regulation of gene expression; GO:0010667 negative regulation of cardiac muscle cell apoptotic process; GO:0010717 regulation of epithelial to mesenchymal transition; GO:0010976 positive regulation of neuron projection development; GO:0014004 microglia differentiation; GO:0014028 notochord formation; GO:0014866 skeletal myofibril assembly; GO:0016477 cell migration; GO:0016525 negative regulation of angiogenesis; GO:0017148 negative regulation of translation; GO:0030154 cell differentiation; GO:0030716 oocyte fate determination; GO:0030718 germ-line stem cell population maintenance; GO:0030903 notochord development; GO:0031643 positive regulation of myelination; GO:0032480 negative regulation of type I interferon production; GO:0034063 cytoplasmic stress granule assembly; GO:0035198 miRNA binding; GO:0035886 vascular associated smooth muscle cell differentiation; GO:0042552 myelination; GO:0042692 muscle cell differentiation; GO:0042759 long-chain fatty acid biosynthetic process; GO:0042802 identical protein binding; GO:0045214 sarcomere organization; GO:0045542 positive regulation of cholesterol biosynthetic process; GO:0045649 regulation of macrophage differentiation; GO:0045650 negative regulation of macrophage differentiation; GO:0045995 regulation of embryonic development; GO:0046832 negative regulation of RNA export from nucleus; GO:0048024 regulation of mRNA splicing, via spliceosome; GO:0048027 mRNA 5'-UTR binding; GO:0048255 mRNA stabilization; GO:0048710 regulation of astrocyte differentiation; GO:0048714 positive regulation of oligodendrocyte differentiation; GO:0051028 mRNA transport; GO:0060034 notochord cell differentiation; GO:0060282 positive regulation of oocyte development; GO:0061158 3'-UTR-mediated mRNA destabilization; GO:0070935 3'-UTR-mediated mRNA stabilization; GO:0097157 pre-mRNA intronic binding; GO:0120163 negative regulation of cold-induced thermogenesis; GO:0160089 internal N(7)-methylguanine-containing RNA reader activity; GO:0160091 spliceosome-depend formation of circular RNA; GO:1905869 negative regulation of 3'-UTR-mediated mRNA stabilization; GO:1905870 positive regulation of 3'-UTR-mediated mRNA stabilization; GO:1905936 regulation of germ cell proliferation; GO:1990764 myofibroblast contraction; GO:2000196 positive regulation of female gonad development; GO:2000623 negative regulation of nuclear-transcribed mRNA catabolic process, nonsense-mediated decay; GO:2000626 negative regulation of miRNA catabolic process
KEGG
KO: K14945 | BRITE: 00001, 03041
Biological context

Connected feature records

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