Feature identity
- Identifier
- PaHa02g39440.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,143 bp
- Genomic location
- 2:95,253,461–95,268,395
- Strand
- +
Hass · mRNA
PaHa02g39440.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,143
- bp
- 2:95,253,461–95,268,395
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g39440
- eggNOG
- Preferred name: BnaA03g58920D | Seed ortholog: 337451.A0A3S3PXK4 | COG: S | eggNOG OG: Myb_CC_LHEQLE@131567|A-1*, Myb_CC_LHEQLE@33090|AN-11, Myb_CC_LHEQLE@3398|GR-16
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0007623 circadian rhythm; GO:0009555 pollen development; GO:0010468 regulation of gene expression; GO:0016036 cellular response to phosphate starvation; GO:0034765 regulation of monoatomic ion transmembrane transport; GO:0055063 sulfate ion homeostasis; GO:0071486 cellular response to high light intensity; GO:1903842 response to arsenite ion
- KEGG
- EC: ec:6.3.4.5 | KO: K01940 | Pathway: 00220, 00250, 01100, 01110, 01230 | Module: M00029, M00844, M00845, M00978 | BRITE: 00001, 01000, 04147
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g39440.1-protein
derives_frommRNAPaHa02g39440.1
mRNAPaHa02g39440.1
part_ofgenePaHa02g39440
CDS
part_ofPaHa02g39440.1-CDS-2-1787993825:95253461..95253693mRNAPaHa02g39440.1
CDS
part_ofPaHa02g39440.1-CDS-2-1787993825:95257814..95257879mRNAPaHa02g39440.1
CDS
part_ofPaHa02g39440.1-CDS-2-1787993825:95260606..95260636mRNAPaHa02g39440.1
CDS
part_ofPaHa02g39440.1-CDS-2-1787993825:95263259..95263298mRNAPaHa02g39440.1
CDS
part_ofPaHa02g39440.1-CDS-2-1787993825:95263372..95263479mRNAPaHa02g39440.1
CDS
part_ofPaHa02g39440.1-CDS-2-1787993825:95266422..95266498mRNAPaHa02g39440.1
CDS
part_ofPaHa02g39440.1-CDS-2-1787993825:95266599..95266641mRNAPaHa02g39440.1
CDS
part_ofPaHa02g39440.1-CDS-2-1787993825:95267111..95267168mRNAPaHa02g39440.1
CDS
part_ofPaHa02g39440.1-CDS-2-1787993825:95267349..95267418mRNAPaHa02g39440.1
CDS
part_ofPaHa02g39440.1-CDS-2-1787993825:95267979..95268395mRNAPaHa02g39440.1
exon
part_ofPaHa02g39440.1-exon-2-1787993825:95253461..95253693mRNAPaHa02g39440.1
exon
part_ofPaHa02g39440.1-exon-2-1787993825:95257814..95257879mRNAPaHa02g39440.1
exon
part_ofPaHa02g39440.1-exon-2-1787993825:95260606..95260636mRNAPaHa02g39440.1
exon
part_ofPaHa02g39440.1-exon-2-1787993825:95263259..95263298mRNAPaHa02g39440.1
exon
part_ofPaHa02g39440.1-exon-2-1787993825:95263372..95263479mRNAPaHa02g39440.1
exon
part_ofPaHa02g39440.1-exon-2-1787993825:95266422..95266498mRNAPaHa02g39440.1
exon
part_ofPaHa02g39440.1-exon-2-1787993825:95266599..95266641mRNAPaHa02g39440.1
exon
part_ofPaHa02g39440.1-exon-2-1787993825:95267111..95267168mRNAPaHa02g39440.1
exon
part_ofPaHa02g39440.1-exon-2-1787993825:95267349..95267418mRNAPaHa02g39440.1
exon
part_ofPaHa02g39440.1-exon-2-1787993825:95267979..95268395mRNAPaHa02g39440.1
