Hass · gene

PaHa01g13480

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,457
bp
1:21,456,567–21,465,131
genomic location
Record overview

Feature identity

Identifier
PaHa01g13480
Feature type
gene
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
2,457 bp
Genomic location
1:21,456,567–21,465,131
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: SNM1 | Seed ortholog: 337451.A0A3S3Q679 | COG: S | eggNOG OG: DRMBL@131567|O-4, SAM_1@131567|Z-5
Gene Ontology
GO:0000209 protein polyubiquitination; GO:0000278 mitotic cell cycle; GO:0000281 mitotic cytokinesis; GO:0000776 kinetochore; GO:0000902 cell morphogenesis; GO:0000909 sporocarp development involved in sexual reproduction; GO:0000976 transcription cis-regulatory region binding; GO:0001411 hyphal tip; GO:0001650 fibrillar center; GO:0001675 acrosome assembly; GO:0001921 positive regulation of receptor recycling; GO:0001946 lymphangiogenesis; GO:0002090 regulation of receptor internalization; GO:0002102 podosome; GO:0002237 response to molecule of bacterial origin; GO:0003674 molecular_function; GO:0003684 damaged DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0003723 RNA binding; GO:0003729 mRNA binding; GO:0003777 microtubule motor activity; GO:0003910 DNA ligase (ATP) activity; GO:0004672 protein kinase activity; GO:0004709 MAP kinase kinase kinase activity; GO:0004806 triacylglycerol lipase activity; GO:0005085 guanyl-nucleotide exchange factor activity; GO:0005096 GTPase activator activity; GO:0005515 protein binding; GO:0005547 phosphatidylinositol-3,4,5-trisphosphate binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005635 nuclear envelope; GO:0005654 nucleoplasm; GO:0005737 cytoplasm; GO:0005759 mitochondrial matrix; GO:0005769 early endosome; GO:0005771 multivesicular body; GO:0005783 endoplasmic reticulum; GO:0005789 endoplasmic reticulum membrane; GO:0005793 endoplasmic reticulum-Golgi intermediate compartment; GO:0005794 Golgi apparatus; GO:0005801 cis-Golgi network; GO:0005802 trans-Golgi network; GO:0005813 centrosome; GO:0005814 centriole; GO:0005819 spindle; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0005929 cilium; GO:0005930 axoneme; GO:0006281 DNA repair; GO:0006289 nucleotide-excision repair; GO:0006303 double-strand break repair via nonhomologous end joining; GO:0006511 ubiquitin-dependent protein catabolic process; GO:0006886 intracellular protein transport; GO:0006929 substrate-dependent cell migration; GO:0006935 chemotaxis; GO:0006970 response to osmotic stress; GO:0006979 response to oxidative stress; GO:0007015 actin filament organization; GO:0007019 microtubule depolymerization; GO:0007030 Golgi organization; GO:0007052 mitotic spindle organization; GO:0007165 signal transduction; GO:0007179 transforming growth factor beta receptor signaling pathway; GO:0007286 spermatid development; GO:0007338 single fertilization; GO:0007446 imaginal disc growth; GO:0007626 locomotory behavior; GO:0008150 biological_process; GO:0008270 zinc ion binding; GO:0008360 regulation of cell shape; GO:0008409 5'-3' exonuclease activity; GO:0008542 visual learning; GO:0008800 beta-lactamase activity; GO:0009409 response to cold; GO:0009845 seed germination; GO:0010225 response to UV-C; GO:0014069 postsynaptic density; GO:0015074 DNA integration; GO:0015629 actin cytoskeleton; GO:0016020 membrane; GO:0016322 neuron remodeling; GO:0016607 nuclear speck; GO:0017148 negative regulation of translation; GO:0019433 triglyceride catabolic process; GO:0019897 extrinsic component of plasma membrane; GO:0019904 protein domain specific binding; GO:0030036 actin cytoskeleton organization; GO:0030134 COPII-coated ER to Golgi transport vesicle; GO:0030371 translation repressor activity; GO:0030674 protein-macromolecule adaptor activity; GO:0031507 heterochromatin formation; GO:0031702 type 1 angiotensin receptor binding; GO:0031981 nuclear lumen; GO:0032991 protein-containing complex; GO:0034389 lipid droplet organization; GO:0034451 centriolar satellite; GO:0034485 phosphatidylinositol-3,4,5-trisphosphate 5-phosphatase activity; GO:0034599 cellular response to oxidative stress; GO:0035312 5'-3' DNA exonuclease activity; GO:0036064 ciliary basal body; GO:0036297 interstrand cross-link repair; GO:0036498 IRE1-mediated unfolded protein response; GO:0042043 neurexin family protein binding; GO:0042802 identical protein binding; GO:0043005 neuron projection; GO:0043066 negative regulation of apoptotic process; GO:0043161 proteasome-mediated ubiquitin-dependent protein catabolic process; GO:0043547 positive regulation of GTPase activity; GO:0045124 regulation of bone resorption; GO:0045179 apical cortex; GO:0045202 synapse; GO:0045494 photoreceptor cell maintenance; GO:0045727 positive regulation of translation; GO:0045893 positive regulation of DNA-templated transcription; GO:0046579 positive regulation of Ras protein signal transduction; GO:0046875 ephrin receptor binding; GO:0048013 ephrin receptor signaling pathway; GO:0048316 seed development; GO:0048471 perinuclear region of cytoplasm; GO:0050766 positive regulation of phagocytosis; GO:0050793 regulation of developmental process; GO:0051056 regulation of small GTPase mediated signal transduction; GO:0051491 positive regulation of filopodium assembly; GO:0051497 negative regulation of stress fiber assembly; GO:0051865 protein autoubiquitination; GO:0060271 cilium assembly; GO:0060404 axonemal microtubule depolymerization; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding; GO:0061630 ubiquitin protein ligase activity; GO:0070412 R-SMAD binding; GO:0070462 plus-end specific microtubule depolymerization; GO:0070534 protein K63-linked ubiquitination; GO:0070791 cleistothecium development; GO:0070936 protein K48-linked ubiquitination; GO:0070938 contractile ring; GO:0070971 endoplasmic reticulum exit site; GO:0089720 caspase binding; GO:0090141 positive regulation of mitochondrial fission; GO:0097038 perinuclear endoplasmic reticulum; GO:0097120 receptor localization to synapse; GO:0097568 median body; GO:0097597 ventral disc; GO:0097729 9+2 motile cilium; GO:0098685 Schaffer collateral - CA1 synapse; GO:0098686 hippocampal mossy fiber to CA3 synapse; GO:0098749 cerebellar neuron development; GO:0098793 presynapse; GO:0098794 postsynapse; GO:0098978 glutamatergic synapse; GO:0099092 postsynaptic density, intracellular component; GO:0099151 regulation of postsynaptic density assembly; GO:0099523 presynaptic cytosol; GO:0099527 postsynapse to nucleus signaling pathway; GO:0099565 chemical synaptic transmission, postsynaptic; GO:0120516 diacylglycerol lipase activity; GO:0150052 regulation of postsynapse assembly; GO:1900376 regulation of secondary metabolite biosynthetic process; GO:1900383 regulation of synaptic plasticity by receptor localization to synapse; GO:1901255 nucleotide-excision repair involved in interstrand cross-link repair; GO:1902018 negative regulation of cilium assembly; GO:1903895 negative regulation of IRE1-mediated unfolded protein response; GO:1904975 response to bleomycin; GO:1905519 negative regulation of presynaptic active zone assembly; GO:1990755 mitotic spindle microtubule depolymerization; GO:2000685 positive regulation of cellular response to X-ray
KEGG
EC: ec:2.7.11.25, ec:3.1.3.86 | KO: K15340 | Pathway: 00562, 01100, 03083, 03450, 04011, 04015, 04024, 04070, 04144, 04530, 04662, 04666, 04814, 04910 | BRITE: 00001, 03400
Biological context

Connected feature records

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