Feature identity
- Identifier
- PaHa02g38240.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 927 bp
- Genomic location
- 2:93,795,450–93,800,499
- Strand
- −
Hass · mRNA
PaHa02g38240.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 927
- bp
- 2:93,795,450–93,800,499
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g38240
- eggNOG
- Preferred name: LOC104613451 | Seed ortholog: 337451.A0A3S3PWB7 | COG: COG1680 | eggNOG OG: EF-hand_5@131567|MJ-16, EF-hand_5@1437183|Kgx-39, EF-hand_5@2759|EsZ-32, EF-hand_6@131567|AF-6, EF-hand_6@2759|HP-10, EF-hand_6@33090|Ahb-21
- Gene Ontology
- GO:0002020 protease binding; GO:0003674 molecular_function; GO:0005102 signaling receptor binding; GO:0005246 calcium channel regulator activity; GO:0005509 calcium ion binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0009610 response to symbiotic fungus; GO:0042802 identical protein binding; GO:0044325 transmembrane transporter binding; GO:0046982 protein heterodimerization activity; GO:0046983 protein dimerization activity; GO:0048306 calcium-dependent protein binding; GO:0140297 DNA-binding transcription factor binding; GO:0140311 protein sequestering activity; GO:0140416 transcription regulator inhibitor activity; GO:1990756 ubiquitin-like ligase-substrate adaptor activity
- KEGG
- EC: ec:2.7.11.1 | KO: K13448 | Pathway: 04626 | BRITE: 00001
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g38240.1-protein
derives_frommRNAPaHa02g38240.1
mRNAPaHa02g38240.1
part_ofgenePaHa02g38240
CDS
part_ofPaHa02g38240.1-CDS-2-1787993825:93795450..93795557mRNAPaHa02g38240.1
CDS
part_ofPaHa02g38240.1-CDS-2-1787993825:93796457..93796475mRNAPaHa02g38240.1
CDS
part_ofPaHa02g38240.1-CDS-2-1787993825:93797515..93797690mRNAPaHa02g38240.1
CDS
part_ofPaHa02g38240.1-CDS-2-1787993825:93797791..93797837mRNAPaHa02g38240.1
CDS
part_ofPaHa02g38240.1-CDS-2-1787993825:93799923..93800499mRNAPaHa02g38240.1
exon
part_ofPaHa02g38240.1-exon-2-1787993825:93795450..93795557mRNAPaHa02g38240.1
exon
part_ofPaHa02g38240.1-exon-2-1787993825:93796457..93796475mRNAPaHa02g38240.1
exon
part_ofPaHa02g38240.1-exon-2-1787993825:93797515..93797690mRNAPaHa02g38240.1
exon
part_ofPaHa02g38240.1-exon-2-1787993825:93797791..93797837mRNAPaHa02g38240.1
exon
part_ofPaHa02g38240.1-exon-2-1787993825:93799923..93800499mRNAPaHa02g38240.1
