Feature identity
- Identifier
- PaHa02g38200.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 252 bp
- Genomic location
- 2:93,760,589–93,761,940
- Strand
- +
Hass · mRNA
PaHa02g38200.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 252
- bp
- 2:93,760,589–93,761,940
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g38200
- eggNOG
- Preferred name: LOC107889950 | Seed ortholog: 337451.A0A3S3PXE7 | COG: S | eggNOG OG: eIF3_N@2759|A-1
- Gene Ontology
- GO:0003729 mRNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0005852 eukaryotic translation initiation factor 3 complex; GO:0006352 DNA-templated transcription initiation; GO:0006412 translation; GO:0008180 COP9 signalosome; GO:0009640 photomorphogenesis; GO:0009908 flower development; GO:0030371 translation repressor activity; GO:0031597 cytosolic proteasome complex
- KEGG
- EC: ec:2.6.1.62, ec:6.3.3.3 | KO: K03250 | Pathway: 00780, 01100, 01240 | Module: M00123 | BRITE: 00001, 03012, 03051, 04147
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g38200.1-protein
derives_frommRNAPaHa02g38200.1
mRNAPaHa02g38200.1
part_ofgenePaHa02g38200
CDS
part_ofPaHa02g38200.1-CDS-2-1787993825:93760589..93760631mRNAPaHa02g38200.1
CDS
part_ofPaHa02g38200.1-CDS-2-1787993825:93760793..93760884mRNAPaHa02g38200.1
CDS
part_ofPaHa02g38200.1-CDS-2-1787993825:93761824..93761940mRNAPaHa02g38200.1
exon
part_ofPaHa02g38200.1-exon-2-1787993825:93760589..93760631mRNAPaHa02g38200.1
exon
part_ofPaHa02g38200.1-exon-2-1787993825:93760793..93760884mRNAPaHa02g38200.1
exon
part_ofPaHa02g38200.1-exon-2-1787993825:93761824..93761940mRNAPaHa02g38200.1
