Hass · mRNA

PaHa02g35840.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

6,213
bp
2:89,723,211–89,765,154
genomic location
Record overview

Feature identity

Identifier
PaHa02g35840.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
6,213 bp
Genomic location
2:89,723,211–89,765,154
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC106780117 | Seed ortholog: 337451.A0A443N7I1 | COG: S | eggNOG OG: GYF@131567|A-1*, GYF@2759|C-2, GYF@3398|dX-21, GYF@35493|Uz-19
Gene Ontology
GO:0000900 mRNA regulatory element binding translation repressor activity; GO:0003674 molecular_function; GO:0003723 RNA binding; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005768 endosome; GO:0005783 endoplasmic reticulum; GO:0005789 endoplasmic reticulum membrane; GO:0005794 Golgi apparatus; GO:0005829 cytosol; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006888 endoplasmic reticulum to Golgi vesicle-mediated transport; GO:0007631 feeding behavior; GO:0008150 biological_process; GO:0008344 adult locomotory behavior; GO:0009791 post-embryonic development; GO:0010494 cytoplasmic stress granule; GO:0010506 regulation of autophagy; GO:0016020 membrane; GO:0016281 eukaryotic translation initiation factor 4F complex; GO:0016441 post-transcriptional gene silencing; GO:0017148 negative regulation of translation; GO:0021522 spinal cord motor neuron differentiation; GO:0031571 mitotic G1 DNA damage checkpoint signaling; GO:0031982 vesicle; GO:0032984 protein-containing complex disassembly; GO:0032991 protein-containing complex; GO:0035264 multicellular organism growth; GO:0043204 perikaryon; GO:0045296 cadherin binding; GO:0045947 negative regulation of translational initiation; GO:0046716 muscle cell cellular homeostasis; GO:0048009 insulin-like growth factor receptor signaling pathway; GO:0048873 homeostasis of number of cells within a tissue; GO:0050881 musculoskeletal movement; GO:0050885 neuromuscular process controlling balance; GO:0051664 nuclear pore localization; GO:0060090 molecular adaptor activity; GO:0060339 negative regulation of type I interferon-mediated signaling pathway; GO:0061157 mRNA destabilization; GO:0070050 neuron cellular homeostasis; GO:0070064 proline-rich region binding; GO:0071630 nuclear protein quality control by the ubiquitin-proteasome system; GO:0072344 rescue of stalled cytosolic ribosome; GO:1990261 pre-mRNA catabolic process; GO:1990635 proximal dendrite
KEGG
KO: K18730 | BRITE: 00001, 03019
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa02g35840.1-CDS-2-1787993825:89723211..89723252
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89725514..89725624
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89726299..89726433
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89726625..89726696
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89726775..89726853
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89727077..89727126
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89730037..89730140
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89730258..89730326
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89730429..89730492
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89734428..89734496
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89736615..89736698
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89741752..89741810
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89741924..89741990
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89743218..89743301
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89748620..89748776
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89750853..89750915
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89751194..89751288
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89752935..89753825
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89757228..89757324
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89757403..89757501
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89757649..89758530
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89758623..89760902
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89761055..89761127
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89764165..89764316
part_of
CDSPaHa02g35840.1-CDS-2-1787993825:89764820..89765154
part_of
exonPaHa02g35840.1-exon-2-1787993825:89723211..89723252
part_of
exonPaHa02g35840.1-exon-2-1787993825:89725514..89725624
part_of
exonPaHa02g35840.1-exon-2-1787993825:89726299..89726433
part_of
exonPaHa02g35840.1-exon-2-1787993825:89726625..89726696
part_of
exonPaHa02g35840.1-exon-2-1787993825:89726775..89726853
part_of
exonPaHa02g35840.1-exon-2-1787993825:89727077..89727126
part_of
exonPaHa02g35840.1-exon-2-1787993825:89730037..89730140
part_of
exonPaHa02g35840.1-exon-2-1787993825:89730258..89730326
part_of
exonPaHa02g35840.1-exon-2-1787993825:89730429..89730492
part_of
exonPaHa02g35840.1-exon-2-1787993825:89734428..89734496
part_of
exonPaHa02g35840.1-exon-2-1787993825:89736615..89736698
part_of
exonPaHa02g35840.1-exon-2-1787993825:89741752..89741810
part_of
exonPaHa02g35840.1-exon-2-1787993825:89741924..89741990
part_of
exonPaHa02g35840.1-exon-2-1787993825:89743218..89743301
part_of
exonPaHa02g35840.1-exon-2-1787993825:89748620..89748776
part_of
exonPaHa02g35840.1-exon-2-1787993825:89750853..89750915
part_of
exonPaHa02g35840.1-exon-2-1787993825:89751194..89751288
part_of
exonPaHa02g35840.1-exon-2-1787993825:89752935..89753825
part_of
exonPaHa02g35840.1-exon-2-1787993825:89757228..89757324
part_of
exonPaHa02g35840.1-exon-2-1787993825:89757403..89757501
part_of
exonPaHa02g35840.1-exon-2-1787993825:89757649..89758530
part_of
exonPaHa02g35840.1-exon-2-1787993825:89758623..89760902
part_of
exonPaHa02g35840.1-exon-2-1787993825:89761055..89761127
part_of
exonPaHa02g35840.1-exon-2-1787993825:89764165..89764316
part_of
exonPaHa02g35840.1-exon-2-1787993825:89764820..89765154
part_of