Feature identity
- Identifier
- PaHa02g34130.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 964 bp
- Genomic location
- 2:87,310,990–87,330,000
- Strand
- −
Hass · mRNA
PaHa02g34130.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 964
- bp
- 2:87,310,990–87,330,000
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g34130
- eggNOG
- Preferred name: PHL2 | Seed ortholog: 337451.A0A443N787 | COG: S | eggNOG OG: Myb_CC_LHEQLE@131567|A-1*, Myb_CC_LHEQLE@3193|Z-8, Myb_CC_LHEQLE@33090|S-7, Myb_CC_LHEQLE@3398|Bx-13, Myb_DNA-binding@131567|dl-20, Myb_DNA-binding@2759|pK-22, Myb_DNA-binding@3193|Bsq-33, Myb_DNA-binding@33090|Apr-30, Myb_DNA-binding@3398|CtT-35
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009567 double fertilization forming a zygote and endosperm; GO:0010468 regulation of gene expression; GO:0010628 positive regulation of gene expression; GO:0016036 cellular response to phosphate starvation; GO:0043565 sequence-specific DNA binding
- KEGG
- EC: ec:6.3.4.5 | KO: K01940 | Pathway: 00220, 00250, 01100, 01110, 01230 | Module: M00029, M00844, M00845, M00978 | BRITE: 00001, 01000, 04147
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g34130.1-protein
derives_frommRNAPaHa02g34130.1
mRNAPaHa02g34130.1
part_ofgenePaHa02g34130
CDS
part_ofPaHa02g34130.1-CDS-2-1787993825:87310990..87311433mRNAPaHa02g34130.1
CDS
part_ofPaHa02g34130.1-CDS-2-1787993825:87311519..87311588mRNAPaHa02g34130.1
CDS
part_ofPaHa02g34130.1-CDS-2-1787993825:87311687..87311759mRNAPaHa02g34130.1
CDS
part_ofPaHa02g34130.1-CDS-2-1787993825:87320271..87320325mRNAPaHa02g34130.1
CDS
part_ofPaHa02g34130.1-CDS-2-1787993825:87320604..87320680mRNAPaHa02g34130.1
CDS
part_ofPaHa02g34130.1-CDS-2-1787993825:87329653..87329849mRNAPaHa02g34130.1
CDS
part_ofPaHa02g34130.1-CDS-2-1787993825:87329953..87330000mRNAPaHa02g34130.1
exon
part_ofPaHa02g34130.1-exon-2-1787993825:87310990..87311433mRNAPaHa02g34130.1
exon
part_ofPaHa02g34130.1-exon-2-1787993825:87311519..87311588mRNAPaHa02g34130.1
exon
part_ofPaHa02g34130.1-exon-2-1787993825:87311687..87311759mRNAPaHa02g34130.1
exon
part_ofPaHa02g34130.1-exon-2-1787993825:87320271..87320325mRNAPaHa02g34130.1
exon
part_ofPaHa02g34130.1-exon-2-1787993825:87320604..87320680mRNAPaHa02g34130.1
exon
part_ofPaHa02g34130.1-exon-2-1787993825:87329653..87329849mRNAPaHa02g34130.1
exon
part_ofPaHa02g34130.1-exon-2-1787993825:87329953..87330000mRNAPaHa02g34130.1
