Feature identity
- Identifier
- PaHa02g34010.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,136 bp
- Genomic location
- 2:87,128,599–87,131,755
- Strand
- +
Hass · mRNA
PaHa02g34010.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,136
- bp
- 2:87,128,599–87,131,755
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g34010
- eggNOG
- Preferred name: VP1 | Seed ortholog: 337451.A0A443N759 | COG: S | eggNOG OG: B3@131567|A-1*, B3@33090|AIM-20, B3@3398|CTd-30, B3@58023|Bmr-27
- Gene Ontology
- GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005829 cytosol; GO:0006355 regulation of DNA-templated transcription; GO:0009657 plastid organization; GO:0009733 response to auxin; GO:0009737 response to abscisic acid; GO:0009793 embryo development ending in seed dormancy; GO:0031930 mitochondria-nucleus signaling pathway; GO:0043565 sequence-specific DNA binding; GO:0045893 positive regulation of DNA-templated transcription
- KEGG
- KO: K09287 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g34010.1-protein
derives_frommRNAPaHa02g34010.1
mRNAPaHa02g34010.1
part_ofgenePaHa02g34010
CDS
part_ofPaHa02g34010.1-CDS-2-1787993825:87128599..87130176mRNAPaHa02g34010.1
CDS
part_ofPaHa02g34010.1-CDS-2-1787993825:87130353..87130445mRNAPaHa02g34010.1
CDS
part_ofPaHa02g34010.1-CDS-2-1787993825:87130810..87130910mRNAPaHa02g34010.1
CDS
part_ofPaHa02g34010.1-CDS-2-1787993825:87130988..87131034mRNAPaHa02g34010.1
CDS
part_ofPaHa02g34010.1-CDS-2-1787993825:87131439..87131755mRNAPaHa02g34010.1
exon
part_ofPaHa02g34010.1-exon-2-1787993825:87128599..87130176mRNAPaHa02g34010.1
exon
part_ofPaHa02g34010.1-exon-2-1787993825:87130353..87130445mRNAPaHa02g34010.1
exon
part_ofPaHa02g34010.1-exon-2-1787993825:87130810..87130910mRNAPaHa02g34010.1
exon
part_ofPaHa02g34010.1-exon-2-1787993825:87130988..87131034mRNAPaHa02g34010.1
exon
part_ofPaHa02g34010.1-exon-2-1787993825:87131439..87131755mRNAPaHa02g34010.1
