Feature identity
- Identifier
- PaHa02g33860.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,668 bp
- Genomic location
- 2:86,816,966–86,824,257
- Strand
- +
Hass · mRNA
PaHa02g33860.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,668
- bp
- 2:86,816,966–86,824,257
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g33860
- eggNOG
- Preferred name: ESC | Seed ortholog: 337451.A0A3S3MT57 | COG: S | eggNOG OG: PCC@131567|A-1, PCC@33090|WK-15!
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0001227 DNA-binding transcription repressor activity, RNA polymerase II-specific; GO:0003674 molecular_function; GO:0003677 DNA binding; GO:0003680 minor groove of adenine-thymine-rich DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005694 chromosome; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005886 plasma membrane; GO:0008150 biological_process; GO:0010051 xylem and phloem pattern formation; GO:0010089 xylem development; GO:0042742 defense response to bacterium; GO:0043565 sequence-specific DNA binding; GO:0045717 negative regulation of fatty acid biosynthetic process; GO:0045892 negative regulation of DNA-templated transcription; GO:0090377 seed trichome initiation; GO:0098687 chromosomal region
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g33860.1-protein
derives_frommRNAPaHa02g33860.1
mRNAPaHa02g33860.1
part_ofgenePaHa02g33860
CDS
part_ofPaHa02g33860.1-CDS-2-1787993825:86816966..86817989mRNAPaHa02g33860.1
CDS
part_ofPaHa02g33860.1-CDS-2-1787993825:86818787..86818839mRNAPaHa02g33860.1
CDS
part_ofPaHa02g33860.1-CDS-2-1787993825:86821221..86821361mRNAPaHa02g33860.1
CDS
part_ofPaHa02g33860.1-CDS-2-1787993825:86823003..86823164mRNAPaHa02g33860.1
CDS
part_ofPaHa02g33860.1-CDS-2-1787993825:86823250..86823496mRNAPaHa02g33860.1
CDS
part_ofPaHa02g33860.1-CDS-2-1787993825:86824217..86824257mRNAPaHa02g33860.1
exon
part_ofPaHa02g33860.1-exon-2-1787993825:86816966..86817989mRNAPaHa02g33860.1
exon
part_ofPaHa02g33860.1-exon-2-1787993825:86818787..86818839mRNAPaHa02g33860.1
exon
part_ofPaHa02g33860.1-exon-2-1787993825:86821221..86821361mRNAPaHa02g33860.1
exon
part_ofPaHa02g33860.1-exon-2-1787993825:86823003..86823164mRNAPaHa02g33860.1
exon
part_ofPaHa02g33860.1-exon-2-1787993825:86823250..86823496mRNAPaHa02g33860.1
exon
part_ofPaHa02g33860.1-exon-2-1787993825:86824217..86824257mRNAPaHa02g33860.1
