Feature identity
- Identifier
- PaHa02g32730.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,629 bp
- Genomic location
- 2:85,299,885–85,321,779
- Strand
- +
Hass · mRNA
PaHa02g32730.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,629
- bp
- 2:85,299,885–85,321,779
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g32730
- eggNOG
- Preferred name: LOC107957567 | Seed ortholog: 210143.A0A1R3IYF1 | COG: S | eggNOG OG: BES1_N@131567|A-1*, BES1_N@1437183|AN-8, BES1_N@3193|p-7, BES1_N@35493|C-2, BES1_N@3629|IR-15, UQ_con@131567|Qe-17, UQ_con@2759|AEA-22, UQ_con@3398|FtU-33!
- Gene Ontology
- GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding; GO:0000987 cis-regulatory region sequence-specific DNA binding; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006355 regulation of DNA-templated transcription; GO:0009414 response to water deprivation; GO:0009416 response to light stimulus; GO:0009507 chloroplast; GO:0009650 UV protection; GO:0009742 brassinosteroid mediated signaling pathway; GO:0042742 defense response to bacterium; GO:0045892 negative regulation of DNA-templated transcription; GO:0048316 seed development; GO:0048481 plant ovule development; GO:0071367 cellular response to brassinosteroid stimulus; GO:1904961 quiescent center organization
- KEGG
- EC: ec:2.3.2.34 | KO: K14503 | Pathway: 04075 | Module: M00019, M00570 | BRITE: 00001
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g32730.1-protein
derives_frommRNAPaHa02g32730.1
mRNAPaHa02g32730.1
part_ofgenePaHa02g32730
CDS
part_ofPaHa02g32730.1-CDS-2-1787993825:85299885..85299988mRNAPaHa02g32730.1
CDS
part_ofPaHa02g32730.1-CDS-2-1787993825:85305650..85305756mRNAPaHa02g32730.1
CDS
part_ofPaHa02g32730.1-CDS-2-1787993825:85309795..85309903mRNAPaHa02g32730.1
CDS
part_ofPaHa02g32730.1-CDS-2-1787993825:85310094..85310172mRNAPaHa02g32730.1
CDS
part_ofPaHa02g32730.1-CDS-2-1787993825:85310295..85310411mRNAPaHa02g32730.1
CDS
part_ofPaHa02g32730.1-CDS-2-1787993825:85310923..85311023mRNAPaHa02g32730.1
CDS
part_ofPaHa02g32730.1-CDS-2-1787993825:85313033..85313064mRNAPaHa02g32730.1
CDS
part_ofPaHa02g32730.1-CDS-2-1787993825:85319197..85319459mRNAPaHa02g32730.1
CDS
part_ofPaHa02g32730.1-CDS-2-1787993825:85321063..85321779mRNAPaHa02g32730.1
exon
part_ofPaHa02g32730.1-exon-2-1787993825:85299885..85299988mRNAPaHa02g32730.1
exon
part_ofPaHa02g32730.1-exon-2-1787993825:85305650..85305756mRNAPaHa02g32730.1
exon
part_ofPaHa02g32730.1-exon-2-1787993825:85309795..85309903mRNAPaHa02g32730.1
exon
part_ofPaHa02g32730.1-exon-2-1787993825:85310094..85310172mRNAPaHa02g32730.1
exon
part_ofPaHa02g32730.1-exon-2-1787993825:85310295..85310411mRNAPaHa02g32730.1
exon
part_ofPaHa02g32730.1-exon-2-1787993825:85310923..85311023mRNAPaHa02g32730.1
exon
part_ofPaHa02g32730.1-exon-2-1787993825:85313033..85313064mRNAPaHa02g32730.1
exon
part_ofPaHa02g32730.1-exon-2-1787993825:85319197..85319459mRNAPaHa02g32730.1
exon
part_ofPaHa02g32730.1-exon-2-1787993825:85321063..85321779mRNAPaHa02g32730.1
