Feature identity
- Identifier
- PaHa02g31230.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,014 bp
- Genomic location
- 2:83,081,665–83,096,838
- Strand
- −
Hass · mRNA
PaHa02g31230.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,014
- bp
- 2:83,081,665–83,096,838
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g31230
- eggNOG
- Preferred name: LOC110790858 | Seed ortholog: 337451.A0A3S3PVB6 | COG: S | eggNOG OG: DEK_C@131567|B-2, DEK_C@1437183|Px-17, DEK_C@2759|K-4, SWIB@131567|B-2, SWIB@3398|AsN-31
- Gene Ontology
- GO:0000500 RNA polymerase I upstream activating factor complex; GO:0001165 RNA polymerase I cis-regulatory region sequence-specific DNA binding; GO:0001181 RNA polymerase I general transcription initiation factor activity; GO:0003674 molecular_function; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005730 nucleolus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006325 chromatin organization; GO:0006351 DNA-templated transcription; GO:0006361 transcription initiation at RNA polymerase I promoter; GO:0008150 biological_process; GO:0042790 nucleolar large rRNA transcription by RNA polymerase I; GO:0045943 positive regulation of transcription by RNA polymerase I; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding
- KEGG
- EC: ec:2.3.2.27 | KO: K15223 | BRITE: 00001, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g31230.1-protein
derives_frommRNAPaHa02g31230.1
mRNAPaHa02g31230.1
part_ofgenePaHa02g31230
CDS
part_ofPaHa02g31230.1-CDS-2-1787993825:83081665..83081790mRNAPaHa02g31230.1
CDS
part_ofPaHa02g31230.1-CDS-2-1787993825:83088189..83088394mRNAPaHa02g31230.1
CDS
part_ofPaHa02g31230.1-CDS-2-1787993825:83088461..83088523mRNAPaHa02g31230.1
CDS
part_ofPaHa02g31230.1-CDS-2-1787993825:83092651..83092825mRNAPaHa02g31230.1
CDS
part_ofPaHa02g31230.1-CDS-2-1787993825:83092930..83093044mRNAPaHa02g31230.1
CDS
part_ofPaHa02g31230.1-CDS-2-1787993825:83096510..83096838mRNAPaHa02g31230.1
exon
part_ofPaHa02g31230.1-exon-2-1787993825:83081665..83081790mRNAPaHa02g31230.1
exon
part_ofPaHa02g31230.1-exon-2-1787993825:83088189..83088394mRNAPaHa02g31230.1
exon
part_ofPaHa02g31230.1-exon-2-1787993825:83088461..83088523mRNAPaHa02g31230.1
exon
part_ofPaHa02g31230.1-exon-2-1787993825:83092651..83092825mRNAPaHa02g31230.1
exon
part_ofPaHa02g31230.1-exon-2-1787993825:83092930..83093044mRNAPaHa02g31230.1
exon
part_ofPaHa02g31230.1-exon-2-1787993825:83096510..83096838mRNAPaHa02g31230.1
