Hass · mRNA

PaHa02g27740.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

2,112
bp
2:76,221,474–76,230,941
genomic location
Record overview

Feature identity

Identifier
PaHa02g27740.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
2,112 bp
Genomic location
2:76,221,474–76,230,941
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC100827862 | Seed ortholog: 337451.A0A443N5N6 | COG: S | eggNOG OG: RRN3@2759|A-1
Gene Ontology
GO:0000182 rDNA binding; GO:0001042 RNA polymerase I core binding; GO:0001164 RNA polymerase I core promoter sequence-specific DNA binding; GO:0001179 RNA polymerase I general transcription initiation factor binding; GO:0001181 RNA polymerase I general transcription initiation factor activity; GO:0001701 in utero embryonic development; GO:0003674 molecular_function; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0005829 cytosol; GO:0006352 DNA-templated transcription initiation; GO:0006361 transcription initiation at RNA polymerase I promoter; GO:0007000 nucleolus organization; GO:0007028 cytoplasm organization; GO:0008150 biological_process; GO:0008283 cell population proliferation; GO:0008340 determination of adult lifespan; GO:0010976 positive regulation of neuron projection development; GO:0036099 female germ-line stem cell population maintenance; GO:0042254 ribosome biogenesis; GO:0042790 nucleolar large rRNA transcription by RNA polymerase I; GO:0045893 positive regulation of DNA-templated transcription; GO:0048872 homeostasis of number of cells; GO:0070063 RNA polymerase binding; GO:1902254 negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator; GO:2000142 regulation of DNA-templated transcription initiation
KEGG
KO: K15216 | BRITE: 00001, 03021
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa02g27740.1-CDS-2-1787993825:76221474..76221488
part_of
CDSPaHa02g27740.1-CDS-2-1787993825:76223284..76223386
part_of
CDSPaHa02g27740.1-CDS-2-1787993825:76223479..76223615
part_of
CDSPaHa02g27740.1-CDS-2-1787993825:76225161..76225244
part_of
CDSPaHa02g27740.1-CDS-2-1787993825:76225353..76225424
part_of
CDSPaHa02g27740.1-CDS-2-1787993825:76225528..76225599
part_of
CDSPaHa02g27740.1-CDS-2-1787993825:76225688..76225924
part_of
CDSPaHa02g27740.1-CDS-2-1787993825:76226807..76226917
part_of
CDSPaHa02g27740.1-CDS-2-1787993825:76227013..76227132
part_of
CDSPaHa02g27740.1-CDS-2-1787993825:76227206..76227331
part_of
CDSPaHa02g27740.1-CDS-2-1787993825:76227651..76227719
part_of
CDSPaHa02g27740.1-CDS-2-1787993825:76227919..76228025
part_of
CDSPaHa02g27740.1-CDS-2-1787993825:76229153..76229236
part_of
CDSPaHa02g27740.1-CDS-2-1787993825:76229334..76229430
part_of
CDSPaHa02g27740.1-CDS-2-1787993825:76229679..76229798
part_of
CDSPaHa02g27740.1-CDS-2-1787993825:76230166..76230350
part_of
CDSPaHa02g27740.1-CDS-2-1787993825:76230480..76230727
part_of
CDSPaHa02g27740.1-CDS-2-1787993825:76230817..76230941
part_of
exonPaHa02g27740.1-exon-2-1787993825:76221474..76221488
part_of
exonPaHa02g27740.1-exon-2-1787993825:76223284..76223386
part_of
exonPaHa02g27740.1-exon-2-1787993825:76223479..76223615
part_of
exonPaHa02g27740.1-exon-2-1787993825:76225161..76225244
part_of
exonPaHa02g27740.1-exon-2-1787993825:76225353..76225424
part_of
exonPaHa02g27740.1-exon-2-1787993825:76225528..76225599
part_of
exonPaHa02g27740.1-exon-2-1787993825:76225688..76225924
part_of
exonPaHa02g27740.1-exon-2-1787993825:76226807..76226917
part_of
exonPaHa02g27740.1-exon-2-1787993825:76227013..76227132
part_of
exonPaHa02g27740.1-exon-2-1787993825:76227206..76227331
part_of
exonPaHa02g27740.1-exon-2-1787993825:76227651..76227719
part_of
exonPaHa02g27740.1-exon-2-1787993825:76227919..76228025
part_of
exonPaHa02g27740.1-exon-2-1787993825:76229153..76229236
part_of
exonPaHa02g27740.1-exon-2-1787993825:76229334..76229430
part_of
exonPaHa02g27740.1-exon-2-1787993825:76229679..76229798
part_of
exonPaHa02g27740.1-exon-2-1787993825:76230166..76230350
part_of
exonPaHa02g27740.1-exon-2-1787993825:76230480..76230727
part_of
exonPaHa02g27740.1-exon-2-1787993825:76230817..76230941
part_of