Feature identity
- Identifier
- PaHa02g27570.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,308 bp
- Genomic location
- 2:76,008,735–76,012,714
- Strand
- −
Hass · mRNA
PaHa02g27570.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,308
- bp
- 2:76,008,735–76,012,714
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g27570
- eggNOG
- Preferred name: PHL5 | Seed ortholog: 337451.A0A443N5M4 | COG: S | eggNOG OG: Myb_CC_LHEQLE@131567|A-1*, Myb_CC_LHEQLE@1437183|Ej-15, Myb_CC_LHEQLE@33090|AO-11, Myb_DNA-binding@131567|dl-20, Myb_DNA-binding@2759|pK-22, Myb_DNA-binding@33090|Ctb-35!
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0009742 brassinosteroid mediated signaling pathway; GO:0010167 response to nitrate; GO:0010966 regulation of phosphate transport; GO:0016036 cellular response to phosphate starvation; GO:0016132 brassinosteroid biosynthetic process; GO:0042803 protein homodimerization activity; GO:0043565 sequence-specific DNA binding; GO:0045893 positive regulation of DNA-templated transcription; GO:0051511 negative regulation of unidimensional cell growth; GO:2000024 regulation of leaf development
- KEGG
- EC: ec:6.3.4.5 | KO: K01940 | Pathway: 00220, 00250, 01100, 01110, 01230 | Module: M00029, M00844, M00845, M00978 | BRITE: 00001, 01000, 04147
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g27570.1-protein
derives_frommRNAPaHa02g27570.1
mRNAPaHa02g27570.1
part_ofgenePaHa02g27570
CDS
part_ofPaHa02g27570.1-CDS-2-1787993825:76008735..76008944mRNAPaHa02g27570.1
CDS
part_ofPaHa02g27570.1-CDS-2-1787993825:76009041..76009110mRNAPaHa02g27570.1
CDS
part_ofPaHa02g27570.1-CDS-2-1787993825:76009542..76009596mRNAPaHa02g27570.1
CDS
part_ofPaHa02g27570.1-CDS-2-1787993825:76011325..76011364mRNAPaHa02g27570.1
CDS
part_ofPaHa02g27570.1-CDS-2-1787993825:76011471..76011547mRNAPaHa02g27570.1
CDS
part_ofPaHa02g27570.1-CDS-2-1787993825:76011635..76011839mRNAPaHa02g27570.1
CDS
part_ofPaHa02g27570.1-CDS-2-1787993825:76012064..76012714mRNAPaHa02g27570.1
exon
part_ofPaHa02g27570.1-exon-2-1787993825:76008735..76008944mRNAPaHa02g27570.1
exon
part_ofPaHa02g27570.1-exon-2-1787993825:76009041..76009110mRNAPaHa02g27570.1
exon
part_ofPaHa02g27570.1-exon-2-1787993825:76009542..76009596mRNAPaHa02g27570.1
exon
part_ofPaHa02g27570.1-exon-2-1787993825:76011325..76011364mRNAPaHa02g27570.1
exon
part_ofPaHa02g27570.1-exon-2-1787993825:76011471..76011547mRNAPaHa02g27570.1
exon
part_ofPaHa02g27570.1-exon-2-1787993825:76011635..76011839mRNAPaHa02g27570.1
exon
part_ofPaHa02g27570.1-exon-2-1787993825:76012064..76012714mRNAPaHa02g27570.1
