Feature identity
- Identifier
- PaHa02g24440.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,062 bp
- Genomic location
- 2:70,593,670–70,596,755
- Strand
- −
Hass · mRNA
PaHa02g24440.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,062
- bp
- 2:70,593,670–70,596,755
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g24440
- eggNOG
- Preferred name: SIGC | Seed ortholog: 337451.A0A3S4N790 | COG: COG0568 | eggNOG OG: Sigma70_r2@131567|AQM-18!, Sigma70_r2@33090|NGm-29, Sigma70_r2@58023|SCd-31, Sigma70_r3@131567|C-2!, Sigma70_r3@58023|Em-10, Sigma70_r4@131567|Bnn-30, Sigma70_r4@58023|GWY-43
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0003899 DNA-directed RNA polymerase activity; GO:0006352 DNA-templated transcription initiation; GO:0009507 chloroplast; GO:0016987 sigma factor activity; GO:0071482 cellular response to light stimulus; GO:2001141 regulation of RNA biosynthetic process
- KEGG
- KO: K03093 | BRITE: 00001, 03021
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g24440.1-protein
derives_frommRNAPaHa02g24440.1
mRNAPaHa02g24440.1
part_ofgenePaHa02g24440
CDS
part_ofPaHa02g24440.1-CDS-2-1787993825:70593670..70593951mRNAPaHa02g24440.1
CDS
part_ofPaHa02g24440.1-CDS-2-1787993825:70594770..70594970mRNAPaHa02g24440.1
CDS
part_ofPaHa02g24440.1-CDS-2-1787993825:70595069..70595209mRNAPaHa02g24440.1
CDS
part_ofPaHa02g24440.1-CDS-2-1787993825:70596246..70596476mRNAPaHa02g24440.1
CDS
part_ofPaHa02g24440.1-CDS-2-1787993825:70596549..70596755mRNAPaHa02g24440.1
exon
part_ofPaHa02g24440.1-exon-2-1787993825:70593670..70593951mRNAPaHa02g24440.1
exon
part_ofPaHa02g24440.1-exon-2-1787993825:70594770..70594970mRNAPaHa02g24440.1
exon
part_ofPaHa02g24440.1-exon-2-1787993825:70595069..70595209mRNAPaHa02g24440.1
exon
part_ofPaHa02g24440.1-exon-2-1787993825:70596246..70596476mRNAPaHa02g24440.1
exon
part_ofPaHa02g24440.1-exon-2-1787993825:70596549..70596755mRNAPaHa02g24440.1
