Feature identity
- Identifier
- PaHa02g20700.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 894 bp
- Genomic location
- 2:54,884,259–54,886,241
- Strand
- +
Hass · mRNA
PaHa02g20700.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 894
- bp
- 2:54,884,259–54,886,241
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g20700
- eggNOG
- Preferred name: SMO1-1 | Seed ortholog: 337451.A0A3S3MW99 | COG: S | eggNOG OG: FA_hydroxylase@131567|Ag-7, FA_hydroxylase@2759|AfA-21, FA_hydroxylase@3398|FJa-30
- Gene Ontology
- GO:0005789 endoplasmic reticulum membrane; GO:0006631 fatty acid metabolic process; GO:0006695 cholesterol biosynthetic process; GO:0006696 ergosterol biosynthetic process; GO:0008202 steroid metabolic process; GO:0032330 regulation of chondrocyte differentiation; GO:0036197 zymosterol biosynthetic process; GO:0071466 cellular response to xenobiotic stimulus; GO:0071771 aldehyde oxygenase (deformylating) activity; GO:0097720 calcineurin-mediated signaling
- KEGG
- EC: ec:1.14.18.10 | KO: K14423 | Pathway: 00100, 01100, 01110 | Module: M00917 | BRITE: 00001, 01000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g20700.1-protein
derives_frommRNAPaHa02g20700.1
mRNAPaHa02g20700.1
part_ofgenePaHa02g20700
CDS
part_ofPaHa02g20700.1-CDS-2-1787993825:54884259..54884570mRNAPaHa02g20700.1
CDS
part_ofPaHa02g20700.1-CDS-2-1787993825:54884663..54884985mRNAPaHa02g20700.1
CDS
part_ofPaHa02g20700.1-CDS-2-1787993825:54885699..54885846mRNAPaHa02g20700.1
CDS
part_ofPaHa02g20700.1-CDS-2-1787993825:54885963..54885995mRNAPaHa02g20700.1
CDS
part_ofPaHa02g20700.1-CDS-2-1787993825:54886164..54886241mRNAPaHa02g20700.1
exon
part_ofPaHa02g20700.1-exon-2-1787993825:54884259..54884570mRNAPaHa02g20700.1
exon
part_ofPaHa02g20700.1-exon-2-1787993825:54884663..54884985mRNAPaHa02g20700.1
exon
part_ofPaHa02g20700.1-exon-2-1787993825:54885699..54885846mRNAPaHa02g20700.1
exon
part_ofPaHa02g20700.1-exon-2-1787993825:54885963..54885995mRNAPaHa02g20700.1
exon
part_ofPaHa02g20700.1-exon-2-1787993825:54886164..54886241mRNAPaHa02g20700.1
