Feature identity
- Identifier
- PaHa02g19440.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 879 bp
- Genomic location
- 2:50,923,591–50,939,916
- Strand
- +
Hass · mRNA
PaHa02g19440.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 879
- bp
- 2:50,923,591–50,939,916
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g19440
- eggNOG
- Preferred name: RPT6A | Seed ortholog: 337451.A0A3S3N426 | COG: S | eggNOG OG: AAA@131567|Afu-19, AAA@2759|NSS-33, AAA_lid_3@131567|DL-10, AAA_lid_3@2759|Xo-16, AAA_lid_3@3398|PoJ-42, Prot_ATP_ID_OB@131567|A-1, Prot_ATP_ID_OB@2759|Ae-8
- Gene Ontology
- GO:0000502 proteasome complex; GO:0003712 transcription coregulator activity; GO:0005102 signaling receptor binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006511 ubiquitin-dependent protein catabolic process; GO:0008134 transcription factor binding; GO:0008540 proteasome regulatory particle, base subcomplex; GO:0009536 plastid; GO:0016887 ATP hydrolysis activity; GO:0017025 TBP-class protein binding; GO:0019904 protein domain specific binding; GO:0031531 thyrotropin-releasing hormone receptor binding; GO:0031625 ubiquitin protein ligase binding; GO:0036402 proteasome-activating activity; GO:0140296 general transcription initiation factor binding; GO:0140297 DNA-binding transcription factor binding
- KEGG
- KO: K03066 | Pathway: 03050 | BRITE: 00001, 03051
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g19440.1-protein
derives_frommRNAPaHa02g19440.1
mRNAPaHa02g19440.1
part_ofgenePaHa02g19440
CDS
part_ofPaHa02g19440.1-CDS-2-1787993825:50923591..50923720mRNAPaHa02g19440.1
CDS
part_ofPaHa02g19440.1-CDS-2-1787993825:50924026..50924123mRNAPaHa02g19440.1
CDS
part_ofPaHa02g19440.1-CDS-2-1787993825:50932664..50932728mRNAPaHa02g19440.1
CDS
part_ofPaHa02g19440.1-CDS-2-1787993825:50933301..50933378mRNAPaHa02g19440.1
CDS
part_ofPaHa02g19440.1-CDS-2-1787993825:50936100..50936256mRNAPaHa02g19440.1
CDS
part_ofPaHa02g19440.1-CDS-2-1787993825:50936362..50936460mRNAPaHa02g19440.1
CDS
part_ofPaHa02g19440.1-CDS-2-1787993825:50938412..50938522mRNAPaHa02g19440.1
CDS
part_ofPaHa02g19440.1-CDS-2-1787993825:50939776..50939916mRNAPaHa02g19440.1
exon
part_ofPaHa02g19440.1-exon-2-1787993825:50923591..50923720mRNAPaHa02g19440.1
exon
part_ofPaHa02g19440.1-exon-2-1787993825:50924026..50924123mRNAPaHa02g19440.1
exon
part_ofPaHa02g19440.1-exon-2-1787993825:50932664..50932728mRNAPaHa02g19440.1
exon
part_ofPaHa02g19440.1-exon-2-1787993825:50933301..50933378mRNAPaHa02g19440.1
exon
part_ofPaHa02g19440.1-exon-2-1787993825:50936100..50936256mRNAPaHa02g19440.1
exon
part_ofPaHa02g19440.1-exon-2-1787993825:50936362..50936460mRNAPaHa02g19440.1
exon
part_ofPaHa02g19440.1-exon-2-1787993825:50938412..50938522mRNAPaHa02g19440.1
exon
part_ofPaHa02g19440.1-exon-2-1787993825:50939776..50939916mRNAPaHa02g19440.1
