Feature identity
- Identifier
- PaHa02g13510.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 798 bp
- Genomic location
- 2:23,413,221–23,420,377
- Strand
- −
Hass · mRNA
PaHa02g13510.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 798
- bp
- 2:23,413,221–23,420,377
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g13510
- eggNOG
- Preferred name: LOC103710266 | Seed ortholog: 337451.A0A443N2Z6 | COG: COG0330 | eggNOG OG: Band_7@131567|C-2!
- Gene Ontology
- GO:0005515 protein binding; GO:0005783 endoplasmic reticulum; GO:0005789 endoplasmic reticulum membrane; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0015485 cholesterol binding; GO:0031625 ubiquitin protein ligase binding; GO:0032933 SREBP signaling pathway; GO:0032991 protein-containing complex; GO:0036503 ERAD pathway; GO:0045121 membrane raft; GO:0045540 regulation of cholesterol biosynthetic process; GO:0045541 negative regulation of cholesterol biosynthetic process; GO:0045717 negative regulation of fatty acid biosynthetic process
- KEGG
- KO: K23341 | BRITE: 00001, 04121
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g13510.1-protein
derives_frommRNAPaHa02g13510.1
mRNAPaHa02g13510.1
part_ofgenePaHa02g13510
CDS
part_ofPaHa02g13510.1-CDS-2-1787993825:23413221..23413394mRNAPaHa02g13510.1
CDS
part_ofPaHa02g13510.1-CDS-2-1787993825:23413506..23413664mRNAPaHa02g13510.1
CDS
part_ofPaHa02g13510.1-CDS-2-1787993825:23413782..23413841mRNAPaHa02g13510.1
CDS
part_ofPaHa02g13510.1-CDS-2-1787993825:23414209..23414276mRNAPaHa02g13510.1
CDS
part_ofPaHa02g13510.1-CDS-2-1787993825:23414367..23414484mRNAPaHa02g13510.1
CDS
part_ofPaHa02g13510.1-CDS-2-1787993825:23420159..23420377mRNAPaHa02g13510.1
exon
part_ofPaHa02g13510.1-exon-2-1787993825:23413221..23413394mRNAPaHa02g13510.1
exon
part_ofPaHa02g13510.1-exon-2-1787993825:23413506..23413664mRNAPaHa02g13510.1
exon
part_ofPaHa02g13510.1-exon-2-1787993825:23413782..23413841mRNAPaHa02g13510.1
exon
part_ofPaHa02g13510.1-exon-2-1787993825:23414209..23414276mRNAPaHa02g13510.1
exon
part_ofPaHa02g13510.1-exon-2-1787993825:23414367..23414484mRNAPaHa02g13510.1
exon
part_ofPaHa02g13510.1-exon-2-1787993825:23420159..23420377mRNAPaHa02g13510.1
