PaHa02g12300.1

Hass · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,164: bp
2:20,457,793–20,480,181: genomic location

Record overview

Feature identity

Identifier: PaHa02g12300.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 1,164 bp
Genomic location: 2:20,457,793–20,480,181
Strand: −

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa02g12300

eggNOG: Preferred name: LOC104598292 | Seed ortholog: 337451.A0A3S3MQ61 | eggNOG OG: Prefoldin@131567|Bm-9
Gene Ontology: GO:0000077 DNA damage checkpoint signaling; GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000993 RNA polymerase II complex binding; GO:0001558 regulation of cell growth; GO:0001731 formation of translation preinitiation complex; GO:0003682 chromatin binding; GO:0003714 transcription corepressor activity; GO:0003729 mRNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005694 chromosome; GO:0005700 polytene chromosome; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006364 rRNA processing; GO:0007283 spermatogenesis; GO:0008284 positive regulation of cell population proliferation; GO:0009615 response to virus; GO:0010923 negative regulation of phosphatase activity; GO:0019212 phosphatase inhibitor activity; GO:0042078 germ-line stem cell division; GO:0042771 intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator; GO:0042791 5S class rRNA transcription by RNA polymerase III; GO:0042797 tRNA transcription by RNA polymerase III; GO:0045931 positive regulation of mitotic cell cycle; GO:0050821 protein stabilization; GO:0051219 phosphoprotein binding; GO:0051446 positive regulation of meiotic cell cycle; GO:0071363 cellular response to growth factor stimulus; GO:0071383 cellular response to steroid hormone stimulus; GO:0101031 protein folding chaperone complex; GO:1990062 RPAP3/R2TP/prefoldin-like complex; GO:1990113 RNA polymerase I assembly; GO:1990114 RNA polymerase II core complex assembly; GO:1990115 RNA polymerase III assembly; GO:2001209 positive regulation of transcription elongation by RNA polymerase I; GO:2001243 negative regulation of intrinsic apoptotic signaling pathway
KEGG: KO: K17560 | BRITE: 00001, 01009

Biological context