Feature identity
- Identifier
- PaHa02g12270.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,698 bp
- Genomic location
- 2:20,408,972–20,417,046
- Strand
- −
Hass · mRNA
PaHa02g12270.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,698
- bp
- 2:20,408,972–20,417,046
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g12270
- eggNOG
- Preferred name: FHY3 | Seed ortholog: 337451.A0A443N2S5 | COG: S | eggNOG OG: MULE@131567|BE-8, MULE@1437183|AKW-21!, MULE@2759|Du-10, MULE@3398|Wd-16, SWIM@131567|Z-5, SWIM@1437183|Bxs-27!, SWIM@3398|Afq-22
- Gene Ontology
- GO:0001228 DNA-binding transcription activator activity, RNA polymerase II-specific; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0007623 circadian rhythm; GO:0009585 red, far-red light phototransduction; GO:0009639 response to red or far red light; GO:0010017 red or far-red light signaling pathway; GO:0010018 far-red light signaling pathway; GO:0010218 response to far red light; GO:0042753 positive regulation of circadian rhythm; GO:0045893 positive regulation of DNA-templated transcription; GO:1900056 negative regulation of leaf senescence
- KEGG
- EC: ec:3.4.16.5 | KO: K13289, K17604, K26145 | Pathway: 04142 | BRITE: 00001, 01000, 01002, 01009, 03110, 04131, 04147, 04990
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g12270.1-protein
derives_frommRNAPaHa02g12270.1
mRNAPaHa02g12270.1
part_ofgenePaHa02g12270
CDS
part_ofPaHa02g12270.1-CDS-2-1787993825:20408972..20409040mRNAPaHa02g12270.1
CDS
part_ofPaHa02g12270.1-CDS-2-1787993825:20409131..20409199mRNAPaHa02g12270.1
CDS
part_ofPaHa02g12270.1-CDS-2-1787993825:20409301..20409918mRNAPaHa02g12270.1
CDS
part_ofPaHa02g12270.1-CDS-2-1787993825:20410669..20411381mRNAPaHa02g12270.1
CDS
part_ofPaHa02g12270.1-CDS-2-1787993825:20414368..20414508mRNAPaHa02g12270.1
CDS
part_ofPaHa02g12270.1-CDS-2-1787993825:20416959..20417046mRNAPaHa02g12270.1
exon
part_ofPaHa02g12270.1-exon-2-1787993825:20408972..20409040mRNAPaHa02g12270.1
exon
part_ofPaHa02g12270.1-exon-2-1787993825:20409131..20409199mRNAPaHa02g12270.1
exon
part_ofPaHa02g12270.1-exon-2-1787993825:20409301..20409918mRNAPaHa02g12270.1
exon
part_ofPaHa02g12270.1-exon-2-1787993825:20410669..20411381mRNAPaHa02g12270.1
exon
part_ofPaHa02g12270.1-exon-2-1787993825:20414368..20414508mRNAPaHa02g12270.1
exon
part_ofPaHa02g12270.1-exon-2-1787993825:20416959..20417046mRNAPaHa02g12270.1
