Hass · mRNA

PaHa02g11390.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,902
bp
2:18,545,582–18,564,845
genomic location
Record overview

Feature identity

Identifier
PaHa02g11390.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
1,902 bp
Genomic location
2:18,545,582–18,564,845
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: LOC100827862 | Seed ortholog: 337451.A0A3S3MQ13 | COG: S | eggNOG OG: RRN3@2759|A-1
Gene Ontology
GO:0000182 rDNA binding; GO:0001042 RNA polymerase I core binding; GO:0001164 RNA polymerase I core promoter sequence-specific DNA binding; GO:0001179 RNA polymerase I general transcription initiation factor binding; GO:0001181 RNA polymerase I general transcription initiation factor activity; GO:0001701 in utero embryonic development; GO:0003674 molecular_function; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005730 nucleolus; GO:0005829 cytosol; GO:0006352 DNA-templated transcription initiation; GO:0006361 transcription initiation at RNA polymerase I promoter; GO:0007000 nucleolus organization; GO:0007028 cytoplasm organization; GO:0008150 biological_process; GO:0008283 cell population proliferation; GO:0008340 determination of adult lifespan; GO:0010976 positive regulation of neuron projection development; GO:0036099 female germ-line stem cell population maintenance; GO:0042254 ribosome biogenesis; GO:0042790 nucleolar large rRNA transcription by RNA polymerase I; GO:0045893 positive regulation of DNA-templated transcription; GO:0048872 homeostasis of number of cells; GO:0070063 RNA polymerase binding; GO:1902254 negative regulation of intrinsic apoptotic signaling pathway by p53 class mediator; GO:2000142 regulation of DNA-templated transcription initiation
KEGG
KO: K15216 | BRITE: 00001, 03021
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa02g11390.1-CDS-2-1787993825:18545582..18545695
part_of
CDSPaHa02g11390.1-CDS-2-1787993825:18546887..18546970
part_of
CDSPaHa02g11390.1-CDS-2-1787993825:18547082..18547153
part_of
CDSPaHa02g11390.1-CDS-2-1787993825:18547246..18547317
part_of
CDSPaHa02g11390.1-CDS-2-1787993825:18547416..18547652
part_of
CDSPaHa02g11390.1-CDS-2-1787993825:18550529..18550639
part_of
CDSPaHa02g11390.1-CDS-2-1787993825:18550749..18550865
part_of
CDSPaHa02g11390.1-CDS-2-1787993825:18551025..18551150
part_of
CDSPaHa02g11390.1-CDS-2-1787993825:18552168..18552236
part_of
CDSPaHa02g11390.1-CDS-2-1787993825:18552365..18552471
part_of
CDSPaHa02g11390.1-CDS-2-1787993825:18553440..18553523
part_of
CDSPaHa02g11390.1-CDS-2-1787993825:18553620..18553716
part_of
CDSPaHa02g11390.1-CDS-2-1787993825:18555846..18555965
part_of
CDSPaHa02g11390.1-CDS-2-1787993825:18558716..18558900
part_of
CDSPaHa02g11390.1-CDS-2-1787993825:18564539..18564845
part_of
exonPaHa02g11390.1-exon-2-1787993825:18545582..18545695
part_of
exonPaHa02g11390.1-exon-2-1787993825:18546887..18546970
part_of
exonPaHa02g11390.1-exon-2-1787993825:18547082..18547153
part_of
exonPaHa02g11390.1-exon-2-1787993825:18547246..18547317
part_of
exonPaHa02g11390.1-exon-2-1787993825:18547416..18547652
part_of
exonPaHa02g11390.1-exon-2-1787993825:18550529..18550639
part_of
exonPaHa02g11390.1-exon-2-1787993825:18550749..18550865
part_of
exonPaHa02g11390.1-exon-2-1787993825:18551025..18551150
part_of
exonPaHa02g11390.1-exon-2-1787993825:18552168..18552236
part_of
exonPaHa02g11390.1-exon-2-1787993825:18552365..18552471
part_of
exonPaHa02g11390.1-exon-2-1787993825:18553440..18553523
part_of
exonPaHa02g11390.1-exon-2-1787993825:18553620..18553716
part_of
exonPaHa02g11390.1-exon-2-1787993825:18555846..18555965
part_of
exonPaHa02g11390.1-exon-2-1787993825:18558716..18558900
part_of
exonPaHa02g11390.1-exon-2-1787993825:18564539..18564845
part_of