Feature identity
- Identifier
- PaHa02g08100.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,791 bp
- Genomic location
- 2:12,784,760–12,788,802
- Strand
- −
Hass · mRNA
PaHa02g08100.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,791
- bp
- 2:12,784,760–12,788,802
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa02g08100
- eggNOG
- Preferred name: ATH1 | Seed ortholog: 337451.A0A3S3MEV0 | COG: S | eggNOG OG: Homeobox_KN@131567|A-1*, Homeobox_KN@2759|C-2!, Homeobox_KN@58023|Di-11, POX@131567|A-1*, POX@3193|W-7, POX@3398|AG-10
- Gene Ontology
- GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0008285 negative regulation of cell population proliferation; GO:0009640 photomorphogenesis; GO:0010073 meristem maintenance; GO:0010227 floral organ abscission; GO:0010228 vegetative to reproductive phase transition of meristem; GO:0010371 regulation of gibberellin biosynthetic process; GO:0043565 sequence-specific DNA binding; GO:0090470 shoot organ boundary specification
- KEGG
- EC: ec:2.1.1.354 | KO: K09355, K09359, K15610, K15611, K15613, K16670, K16671, K16672, K19383, K19553, K19554, K22748, K24889, K24890, K24891 | Pathway: 00310, 01100, 04113, 04148, 04350, 04391, 04550, 05202 | BRITE: 00001, 01000, 03000, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa02g08100.1-protein
derives_frommRNAPaHa02g08100.1
mRNAPaHa02g08100.1
part_ofgenePaHa02g08100
CDS
part_ofPaHa02g08100.1-CDS-2-1787993825:12784760..12784764mRNAPaHa02g08100.1
CDS
part_ofPaHa02g08100.1-CDS-2-1787993825:12785107..12785141mRNAPaHa02g08100.1
CDS
part_ofPaHa02g08100.1-CDS-2-1787993825:12785284..12785342mRNAPaHa02g08100.1
CDS
part_ofPaHa02g08100.1-CDS-2-1787993825:12785841..12785901mRNAPaHa02g08100.1
CDS
part_ofPaHa02g08100.1-CDS-2-1787993825:12786362..12786714mRNAPaHa02g08100.1
CDS
part_ofPaHa02g08100.1-CDS-2-1787993825:12787525..12788802mRNAPaHa02g08100.1
exon
part_ofPaHa02g08100.1-exon-2-1787993825:12784760..12784764mRNAPaHa02g08100.1
exon
part_ofPaHa02g08100.1-exon-2-1787993825:12785107..12785141mRNAPaHa02g08100.1
exon
part_ofPaHa02g08100.1-exon-2-1787993825:12785284..12785342mRNAPaHa02g08100.1
exon
part_ofPaHa02g08100.1-exon-2-1787993825:12785841..12785901mRNAPaHa02g08100.1
exon
part_ofPaHa02g08100.1-exon-2-1787993825:12786362..12786714mRNAPaHa02g08100.1
exon
part_ofPaHa02g08100.1-exon-2-1787993825:12787525..12788802mRNAPaHa02g08100.1
