PaHa02g06640.1

Hass · mRNA

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,978: bp
2:10,806,045–10,825,824: genomic location

Record overview

Feature identity

Identifier: PaHa02g06640.1
Feature type: mRNA
Genome collection: Hass
Organism: Persea americana-Hass
Sequence length: 3,978 bp
Genomic location: 2:10,806,045–10,825,824
Strand: +

Open original Tripal record

Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

Functional index matched identifier: PaHa02g06640

eggNOG: Preferred name: LOC108995666 | Seed ortholog: 3750.A0A498KBN0 | COG: S | eggNOG OG: C2@131567|JV-10, C2@3193|BFF-17, C2@3398|FBE-23, PLD_C@131567|A-1*, PLD_C@2759|G-3, PLD_C@3193|AA-7, PLD_C@3398|EH-12, PLD_C@3749|yz-26, PLDc@131567|A-1, PLDc@3193|Os-17, PLDc@3398|nA-23!, PLDc@35493|Ht-14, PLDc@3749|BpL-34, RabGAP-TBC@131567|A-1*, RabGAP-TBC@2759|GJ-16, RabGAP-TBC@3398|CRI-31
Gene Ontology: GO:0000325 plant-type vacuole; GO:0004630 D-type glycerophospholipase activity; GO:0005096 GTPase activator activity; GO:0005515 protein binding; GO:0005546 phosphatidylinositol-4,5-bisphosphate binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005739 mitochondrion; GO:0005743 mitochondrial inner membrane; GO:0005829 cytosol; GO:0005886 plasma membrane; GO:0006119 oxidative phosphorylation; GO:0006451 translational readthrough; GO:0006886 intracellular protein transport; GO:0006979 response to oxidative stress; GO:0007005 mitochondrion organization; GO:0007007 inner mitochondrial membrane organization; GO:0007165 signal transduction; GO:0008808 cardiolipin synthase activity; GO:0009409 response to cold; GO:0009506 plasmodesma; GO:0009789 positive regulation of abscisic acid-activated signaling pathway; GO:0009793 embryo development ending in seed dormancy; GO:0010044 response to aluminum ion; GO:0012501 programmed cell death; GO:0015630 microtubule cytoskeleton; GO:0016020 membrane; GO:0019216 regulation of lipid metabolic process; GO:0020023 kinetoplast; GO:0022626 cytosolic ribosome; GO:0031267 small GTPase binding; GO:0032049 cardiolipin biosynthetic process; GO:0033108 mitochondrial respiratory chain complex assembly; GO:0033617 mitochondrial respiratory chain complex IV assembly; GO:0034551 mitochondrial respiratory chain complex III assembly; GO:0042742 defense response to bacterium; GO:0045087 innate immune response; GO:0046473 phosphatidic acid metabolic process; GO:0051020 GTPase binding; GO:0061770 translation elongation factor binding; GO:0090333 regulation of stomatal closure; GO:0090395 plant cell papilla
KEGG: EC: ec:3.1.4.4 | KO: K01115, K24796 | Pathway: 00564, 00565, 01100, 01110, 04144 | BRITE: 00001, 01000, 04131

Biological context