Feature identity
- Identifier
- PaHa01g04600.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 504 bp
- Genomic location
- 1:5,864,385–5,864,888
- Strand
- −
Hass · mRNA
PaHa01g04600.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 504
- bp
- 1:5,864,385–5,864,888
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa01g04600
- eggNOG
- Preferred name: LOC110782159 | Seed ortholog: 337451.A0A443NJM7 | COG: S | eggNOG OG: TCP@131221|AC-7, TCP@131567|A-1*, TCP@2759|G-3, TCP@3193|DK-11, TCP@3398|EV-12
- Gene Ontology
- GO:0001216 DNA-binding transcription activator activity; GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0042752 regulation of circadian rhythm; GO:0042753 positive regulation of circadian rhythm; GO:0043565 sequence-specific DNA binding; GO:0048578 positive regulation of long-day photoperiodism, flowering; GO:0140537 transcription regulator activator activity
- KEGG
- KO: K16221 | Pathway: 04712 | BRITE: 00001, 03000
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa01g04600.1-protein
derives_frommRNAPaHa01g04600.1
mRNAPaHa01g04600.1
part_ofgenePaHa01g04600
CDS
part_ofPaHa01g04600.1-CDS-1-1787993825:5864385..5864888mRNAPaHa01g04600.1
exon
part_ofPaHa01g04600.1-exon-1-1787993825:5864385..5864888mRNAPaHa01g04600.1
