Feature identity
- Identifier
- PaHa01g04540.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 564 bp
- Genomic location
- 1:5,796,859–5,798,739
- Strand
- −
Hass · mRNA
PaHa01g04540.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 564
- bp
- 1:5,796,859–5,798,739
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa01g04540
- eggNOG
- Preferred name: LOC104591676 | Seed ortholog: 337451.A0A3S3MLP8 | COG: S | eggNOG OG: HMG_box@131567|Aj-7, HMG_box@2759|Ii-12!, HMG_box@33090|AHq-20
- Gene Ontology
- GO:0000741 karyogamy; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0010197 polar nucleus fusion
- KEGG
- EC: ec:2.1.1.354 | KO: K25507 | Pathway: 00310, 01100, 03410, 04140, 04217, 04613 | BRITE: 00001, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa01g04540.1-protein
derives_frommRNAPaHa01g04540.1
mRNAPaHa01g04540.1
part_ofgenePaHa01g04540
CDS
part_ofPaHa01g04540.1-CDS-1-1787993825:5796859..5796885mRNAPaHa01g04540.1
CDS
part_ofPaHa01g04540.1-CDS-1-1787993825:5796977..5797063mRNAPaHa01g04540.1
CDS
part_ofPaHa01g04540.1-CDS-1-1787993825:5797205..5797249mRNAPaHa01g04540.1
CDS
part_ofPaHa01g04540.1-CDS-1-1787993825:5797354..5797411mRNAPaHa01g04540.1
CDS
part_ofPaHa01g04540.1-CDS-1-1787993825:5797990..5798097mRNAPaHa01g04540.1
CDS
part_ofPaHa01g04540.1-CDS-1-1787993825:5798226..5798274mRNAPaHa01g04540.1
CDS
part_ofPaHa01g04540.1-CDS-1-1787993825:5798376..5798458mRNAPaHa01g04540.1
CDS
part_ofPaHa01g04540.1-CDS-1-1787993825:5798633..5798739mRNAPaHa01g04540.1
exon
part_ofPaHa01g04540.1-exon-1-1787993825:5796859..5796885mRNAPaHa01g04540.1
exon
part_ofPaHa01g04540.1-exon-1-1787993825:5796977..5797063mRNAPaHa01g04540.1
exon
part_ofPaHa01g04540.1-exon-1-1787993825:5797205..5797249mRNAPaHa01g04540.1
exon
part_ofPaHa01g04540.1-exon-1-1787993825:5797354..5797411mRNAPaHa01g04540.1
exon
part_ofPaHa01g04540.1-exon-1-1787993825:5797990..5798097mRNAPaHa01g04540.1
exon
part_ofPaHa01g04540.1-exon-1-1787993825:5798226..5798274mRNAPaHa01g04540.1
exon
part_ofPaHa01g04540.1-exon-1-1787993825:5798376..5798458mRNAPaHa01g04540.1
exon
part_ofPaHa01g04540.1-exon-1-1787993825:5798633..5798739mRNAPaHa01g04540.1
