Hass · mRNA

PaHa_c413g00110.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

3,180
bp
unplaced_contig_413:20,230–23,409
genomic location
Record overview

Feature identity

Identifier
PaHa_c413g00110.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
3,180 bp
Genomic location
unplaced_contig_413:20,230–23,409
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: ARID2401 | Seed ortholog: 112498.A0A2D3URT2 | COG: S | eggNOG OG: ARID@131567|A-1*, ARID@2759|CG-9, ARID@33154|Ll-14
Gene Ontology
GO:0000785 chromatin; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0006261 DNA-templated DNA replication; GO:0006338 chromatin remodeling; GO:0006355 regulation of DNA-templated transcription; GO:0006357 regulation of transcription by RNA polymerase II; GO:0007155 cell adhesion; GO:0008270 zinc ion binding; GO:0016514 SWI/SNF complex; GO:0030447 filamentous growth; GO:0031496 positive regulation of mating type switching; GO:0034198 cellular response to amino acid starvation; GO:0036178 filamentous growth of a population of unicellular organisms in response to neutral pH; GO:0036180 filamentous growth of a population of unicellular organisms in response to biotic stimulus; GO:0036244 cellular response to neutral pH; GO:0044182 filamentous growth of a population of unicellular organisms; GO:0044406 adhesion of symbiont to host; GO:0045815 transcription initiation-coupled chromatin remodeling; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding; GO:0071466 cellular response to xenobiotic stimulus; GO:1900430 positive regulation of filamentous growth of a population of unicellular organisms; GO:1900442 positive regulation of filamentous growth of a population of unicellular organisms in response to neutral pH; GO:1900445 positive regulation of filamentous growth of a population of unicellular organisms in response to biotic stimulus
KEGG
KO: K11771 | Pathway: 03083, 04550 | BRITE: 00001, 03021, 03036
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa_c413g00110.1-CDS-unplaced_contig_413-1787993825:20230..23409
part_of
exonPaHa_c413g00110.1-exon-unplaced_contig_413-1787993825:20230..23409
part_of