Feature identity
- Identifier
- PaHa_c357g00250.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,487 bp
- Genomic location
- unplaced_contig_357:28,212–31,703
- Strand
- +
Hass · mRNA
PaHa_c357g00250.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,487
- bp
- unplaced_contig_357:28,212–31,703
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c357g00250
- eggNOG
- Preferred name: CTF1 | Seed ortholog: 692275.M3BZY7 | COG: S | eggNOG OG: Fungal_trans@131567|A-1*, Fungal_trans@2759|AM-7, Fungal_trans@4751|PsD-39, Zn_clus@131567|A-1*, Zn_clus@2759|EPE-28, Zn_clus@33154|GIX-30, Zn_clus@4751|UcM-39
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0009062 fatty acid catabolic process; GO:0019626 short-chain fatty acid catabolic process; GO:0042758 long-chain fatty acid catabolic process; GO:0045944 positive regulation of transcription by RNA polymerase II
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c357g00250.1-protein
derives_fromgenePaHa_c357g00250
CDS
part_ofPaHa_c357g00250.1-CDS-unplaced_contig_357-1787993825:28212..28461CDS
part_ofPaHa_c357g00250.1-CDS-unplaced_contig_357-1787993825:28679..28907CDS
part_ofPaHa_c357g00250.1-CDS-unplaced_contig_357-1787993825:29295..29697CDS
part_ofPaHa_c357g00250.1-CDS-unplaced_contig_357-1787993825:29885..30075CDS
part_ofPaHa_c357g00250.1-CDS-unplaced_contig_357-1787993825:30132..30999CDS
part_ofPaHa_c357g00250.1-CDS-unplaced_contig_357-1787993825:31068..31444CDS
part_ofPaHa_c357g00250.1-CDS-unplaced_contig_357-1787993825:31535..31703exon
part_ofPaHa_c357g00250.1-exon-unplaced_contig_357-1787993825:28212..28461exon
part_ofPaHa_c357g00250.1-exon-unplaced_contig_357-1787993825:28679..28907exon
part_ofPaHa_c357g00250.1-exon-unplaced_contig_357-1787993825:29295..29697exon
part_ofPaHa_c357g00250.1-exon-unplaced_contig_357-1787993825:29885..30075exon
part_ofPaHa_c357g00250.1-exon-unplaced_contig_357-1787993825:30132..30999exon
part_ofPaHa_c357g00250.1-exon-unplaced_contig_357-1787993825:31068..31444exon
part_ofPaHa_c357g00250.1-exon-unplaced_contig_357-1787993825:31535..31703