Feature identity
- Identifier
- PaHa01g38990.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 474 bp
- Genomic location
- 1:93,163,428–93,181,635
- Strand
- −
Hass · mRNA
PaHa01g38990.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 474
- bp
- 1:93,163,428–93,181,635
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa01g38990
- eggNOG
- Preferred name: PEX4 | Seed ortholog: 337451.A0A443NX62 | COG: S | eggNOG OG: UQ_con@131567|GA-13, UQ_con@2759|RT-17
- Gene Ontology
- GO:0004842 ubiquitin-protein transferase activity; GO:0005739 mitochondrion; GO:0005778 peroxisomal membrane; GO:0006635 fatty acid beta-oxidation; GO:0007031 peroxisome organization; GO:0016558 protein import into peroxisome matrix; GO:0016562 protein import into peroxisome matrix, receptor recycling; GO:0016567 protein ubiquitination; GO:0061631 ubiquitin conjugating enzyme activity
- KEGG
- EC: ec:2.3.2.23 | KO: K10689 | Pathway: 03083, 04013, 04120, 04141, 04624 | BRITE: 00001, 01000, 04121
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa01g38990.1-protein
derives_frommRNAPaHa01g38990.1
mRNAPaHa01g38990.1
part_ofgenePaHa01g38990
CDS
part_ofPaHa01g38990.1-CDS-1-1787993825:93163428..93163516mRNAPaHa01g38990.1
CDS
part_ofPaHa01g38990.1-CDS-1-1787993825:93166196..93166325mRNAPaHa01g38990.1
CDS
part_ofPaHa01g38990.1-CDS-1-1787993825:93168725..93168853mRNAPaHa01g38990.1
CDS
part_ofPaHa01g38990.1-CDS-1-1787993825:93168938..93169057mRNAPaHa01g38990.1
CDS
part_ofPaHa01g38990.1-CDS-1-1787993825:93181630..93181635mRNAPaHa01g38990.1
exon
part_ofPaHa01g38990.1-exon-1-1787993825:93163428..93163516mRNAPaHa01g38990.1
exon
part_ofPaHa01g38990.1-exon-1-1787993825:93166196..93166325mRNAPaHa01g38990.1
exon
part_ofPaHa01g38990.1-exon-1-1787993825:93168725..93168853mRNAPaHa01g38990.1
exon
part_ofPaHa01g38990.1-exon-1-1787993825:93168938..93169057mRNAPaHa01g38990.1
exon
part_ofPaHa01g38990.1-exon-1-1787993825:93181630..93181635mRNAPaHa01g38990.1
