Hass · mRNA

PaHa_c281g00260.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,608
bp
unplaced_contig_281:32,173–34,359
genomic location
Record overview

Feature identity

Identifier
PaHa_c281g00260.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
1,608 bp
Genomic location
unplaced_contig_281:32,173–34,359
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: pmp20 | Seed ortholog: 1097556.R4XGP3 | COG: COG2077 | eggNOG OG: Redoxin@131567|B-2, Redoxin@2759|YE-16
Gene Ontology
GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006954 inflammatory response; GO:0006979 response to oxidative stress; GO:0008340 determination of adult lifespan; GO:0008379 thioredoxin peroxidase activity; GO:0016480 negative regulation of transcription by RNA polymerase III; GO:0031101 fin regeneration; GO:0032967 positive regulation of collagen biosynthetic process; GO:0034599 cellular response to oxidative stress; GO:0034614 cellular response to reactive oxygen species; GO:0042744 hydrogen peroxide catabolic process; GO:0043066 negative regulation of apoptotic process; GO:0045454 cell redox homeostasis; GO:0045824 negative regulation of innate immune response; GO:0051354 negative regulation of oxidoreductase activity; GO:0060785 regulation of apoptosis involved in tissue homeostasis; GO:0140309 unfolded protein holdase activity; GO:2001057 reactive nitrogen species metabolic process
KEGG
EC: ec:1.11.1.24, ec:2.3.2.31 | KO: K11187, K11968 | Pathway: 04146 | BRITE: 00001, 01000, 04121
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa_c281g00260.1-CDS-unplaced_contig_281-1787993825:32173..32649
part_of
CDSPaHa_c281g00260.1-CDS-unplaced_contig_281-1787993825:33131..33779
part_of
CDSPaHa_c281g00260.1-CDS-unplaced_contig_281-1787993825:33878..34359
part_of
exonPaHa_c281g00260.1-exon-unplaced_contig_281-1787993825:32173..32649
part_of
exonPaHa_c281g00260.1-exon-unplaced_contig_281-1787993825:33131..33779
part_of
exonPaHa_c281g00260.1-exon-unplaced_contig_281-1787993825:33878..34359
part_of