Hass · mRNA

PaHa_c258g00300.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

963
bp
unplaced_contig_258:37,394–38,762
genomic location
Record overview

Feature identity

Identifier
PaHa_c258g00300.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
963 bp
Genomic location
unplaced_contig_258:37,394–38,762
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: TBP | Seed ortholog: 441960.B6Q3S9 | COG: S | eggNOG OG: TBP@131567|A-1, TBP@2759|Hc-14
Gene Ontology
GO:0000120 RNA polymerase I transcription regulator complex; GO:0000126 transcription factor TFIIIB complex; GO:0000979 RNA polymerase II core promoter sequence-specific DNA binding; GO:0000995 RNA polymerase III general transcription initiation factor activity; GO:0001006 RNA polymerase III type 3 promoter sequence-specific DNA binding; GO:0001181 RNA polymerase I general transcription initiation factor activity; GO:0003677 DNA binding; GO:0003700 DNA-binding transcription factor activity; GO:0005634 nucleus; GO:0005667 transcription regulator complex; GO:0005669 transcription factor TFIID complex; GO:0006361 transcription initiation at RNA polymerase I promoter; GO:0006367 transcription initiation at RNA polymerase II promoter; GO:0006383 transcription by RNA polymerase III; GO:0006384 transcription initiation at RNA polymerase III promoter; GO:0016251 RNA polymerase II general transcription initiation factor activity; GO:0070898 RNA polymerase III preinitiation complex assembly
KEGG
KO: K03120 | Pathway: 03022 | BRITE: 00001, 03000, 03021
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa_c258g00300.1-CDS-unplaced_contig_258-1787993825:37394..37628
part_of
CDSPaHa_c258g00300.1-CDS-unplaced_contig_258-1787993825:37704..37964
part_of
CDSPaHa_c258g00300.1-CDS-unplaced_contig_258-1787993825:38131..38310
part_of
CDSPaHa_c258g00300.1-CDS-unplaced_contig_258-1787993825:38476..38762
part_of
exonPaHa_c258g00300.1-exon-unplaced_contig_258-1787993825:37394..37628
part_of
exonPaHa_c258g00300.1-exon-unplaced_contig_258-1787993825:37704..37964
part_of
exonPaHa_c258g00300.1-exon-unplaced_contig_258-1787993825:38131..38310
part_of
exonPaHa_c258g00300.1-exon-unplaced_contig_258-1787993825:38476..38762
part_of