Anise · mRNA

Chr01.g07959.m1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,128
bp
Chr01:76,963,882–76,969,436
genomic location
Record overview

Feature identity

Identifier
Chr01.g07959.m1
Feature type
mRNA
Genome collection
Anise
Organism
Persea americana-Anise
Sequence length
1,128 bp
Genomic location
Chr01:76,963,882–76,969,436
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
4081.Solyc01g028930.2.1,K,[TATA-box-binding protein isoform X1]
Gene Ontology
TATA-box-binding protein isoform X1 | GO:0006139//nucleobase-containing compound metabolic process; GO:0006351//transcription, DNA-templated; GO:0006352//DNA-templated transcription, initiation; GO:0006725//cellular aromatic compound metabolic process; GO:0006807//nitrogen compound metabolic process; GO:0008150//biological_process; GO:0008152//metabolic process; GO:0009058//biosynthetic process; GO:0009059//macromolecule biosynthetic process; GO:0009987//cellular process; GO:0010467//gene expression; GO:0016070//RNA metabolic process; GO:0018130//heterocycle biosynthetic process; GO:0019438//aromatic compound biosynthetic process; GO:0032774//RNA biosynthetic process; GO:0034641//cellular nitrogen compound metabolic process; GO:0034645//cellular macromolecule biosynthetic process; GO:0034654//nucleobase-containing compound biosynthetic process; GO:0043170//macromolecule metabolic process; GO:0044237//cellular metabolic process; GO:0044238//primary metabolic process; GO:0044249//cellular biosynthetic process; GO:0044260//cellular macromolecule metabolic process; GO:0044271//cellular nitrogen compound biosynthetic process; GO:0046483//heterocycle metabolic process; GO:0071704//organic substance metabolic process; GO:0090304//nucleic acid metabolic process; GO:0097659//nucleic acid-templated transcription; GO:1901360//organic cyclic compound metabolic process; GO:1901362//organic cyclic compound biosynthetic process; GO:1901576//organic substance biosynthetic process | GO:0005575//cellular_component; GO:0005622//intracellular; GO:0005623//cell; GO:0005634//nucleus; GO:0043226//organelle; GO:0043227//membrane-bounded organelle; GO:0043229//intracellular organelle; GO:0043231//intracellular membrane-bounded organelle; GO:0044424//intracellular part; GO:0044464//cell part | GO:0003674//molecular_function; GO:0003676//nucleic acid binding; GO:0003677//DNA binding; GO:0005488//binding; GO:0005515//protein binding; GO:0008134//transcription factor binding; GO:0017025//TBP-class protein binding; GO:0097159//organic cyclic compound binding; GO:1901363//heterocyclic compound binding
KEGG
K03120 | TBP, tbp
NR
RWR80377.1 TATA-box-binding protein [Cinnamomum micranthum f. kanehirae]
Swiss-Prot
P26357.1 RecName: Full=TATA-box-binding protein; AltName: Full=TATA sequence-binding protein; Short=TBP; AltName: Full=TATA-binding factor; AltName: Full=TATA-box factor; AltName: Full=Transcription initiation factor TFIID TBP subunit [Solanum tuberosum]
Biological context

Connected feature records

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