Feature identity
- Identifier
- PaHa01g37890.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 492 bp
- Genomic location
- 1:91,571,031–91,589,860
- Strand
- −
Hass · mRNA
PaHa01g37890.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 492
- bp
- 1:91,571,031–91,589,860
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa01g37890
- eggNOG
- Preferred name: PHR1 | Seed ortholog: 337451.A0A443NRR8 | COG: S | eggNOG OG: Myb_CC_LHEQLE@131567|A-1*, Myb_CC_LHEQLE@33090|AN-11, Myb_CC_LHEQLE@3398|Id-17, Myb_DNA-binding@131567|dl-20, Myb_DNA-binding@2759|pK-22, Myb_DNA-binding@33090|Ctc-35
- Gene Ontology
- GO:0003700 DNA-binding transcription factor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0006355 regulation of DNA-templated transcription; GO:0048364 root development; GO:1901000 regulation of response to salt stress
- KEGG
- EC: ec:6.3.4.5 | KO: K01940 | Pathway: 00220, 00250, 01100, 01110, 01230 | Module: M00029, M00844, M00845, M00978 | BRITE: 00001, 01000, 04147
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa01g37890.1-protein
derives_frommRNAPaHa01g37890.1
mRNAPaHa01g37890.1
part_ofgenePaHa01g37890
CDS
part_ofPaHa01g37890.1-CDS-1-1787993825:91571031..91571357mRNAPaHa01g37890.1
CDS
part_ofPaHa01g37890.1-CDS-1-1787993825:91572737..91572806mRNAPaHa01g37890.1
CDS
part_ofPaHa01g37890.1-CDS-1-1787993825:91575552..91575609mRNAPaHa01g37890.1
CDS
part_ofPaHa01g37890.1-CDS-1-1787993825:91580474..91580499mRNAPaHa01g37890.1
CDS
part_ofPaHa01g37890.1-CDS-1-1787993825:91589850..91589860mRNAPaHa01g37890.1
exon
part_ofPaHa01g37890.1-exon-1-1787993825:91571031..91571357mRNAPaHa01g37890.1
exon
part_ofPaHa01g37890.1-exon-1-1787993825:91572737..91572806mRNAPaHa01g37890.1
exon
part_ofPaHa01g37890.1-exon-1-1787993825:91575552..91575609mRNAPaHa01g37890.1
exon
part_ofPaHa01g37890.1-exon-1-1787993825:91580474..91580499mRNAPaHa01g37890.1
exon
part_ofPaHa01g37890.1-exon-1-1787993825:91589850..91589860mRNAPaHa01g37890.1
