Feature identity
- Identifier
- PaHa_c218g00200.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 3,666 bp
- Genomic location
- unplaced_contig_218:25,771–29,987
- Strand
- +
Hass · mRNA
PaHa_c218g00200.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 3,666
- bp
- unplaced_contig_218:25,771–29,987
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c218g00200
- eggNOG
- Preferred name: TFC4 | Seed ortholog: 331657.A0A4U0XV45 | COG: S | eggNOG OG: CH@131567|A-1*, CH@2759|B-2, TPR_8@131567|Oj-13
- Gene Ontology
- GO:0000127 transcription factor TFIIIC complex; GO:0000995 RNA polymerase III general transcription initiation factor activity; GO:0001002 RNA polymerase III type 1 promoter sequence-specific DNA binding; GO:0001003 RNA polymerase III type 2 promoter sequence-specific DNA binding; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005654 nucleoplasm; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006383 transcription by RNA polymerase III; GO:0006384 transcription initiation at RNA polymerase III promoter; GO:0008301 DNA binding, bending; GO:0042791 5S class rRNA transcription by RNA polymerase III; GO:0043035 chromatin insulator sequence binding
- KEGG
- KO: K16743 | BRITE: 00001, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c218g00200.1-protein
derives_fromgenePaHa_c218g00200
CDS
part_ofPaHa_c218g00200.1-CDS-unplaced_contig_218-1787993825:25771..25805CDS
part_ofPaHa_c218g00200.1-CDS-unplaced_contig_218-1787993825:25987..26153CDS
part_ofPaHa_c218g00200.1-CDS-unplaced_contig_218-1787993825:26478..27961CDS
part_ofPaHa_c218g00200.1-CDS-unplaced_contig_218-1787993825:28008..29987exon
part_ofPaHa_c218g00200.1-exon-unplaced_contig_218-1787993825:25771..25805exon
part_ofPaHa_c218g00200.1-exon-unplaced_contig_218-1787993825:25987..26153exon
part_ofPaHa_c218g00200.1-exon-unplaced_contig_218-1787993825:26478..27961exon
part_ofPaHa_c218g00200.1-exon-unplaced_contig_218-1787993825:28008..29987