Hass · mRNA

PaHa_c212g00010.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,551
bp
unplaced_contig_212:1,924–3,760
genomic location
Record overview

Feature identity

Identifier
PaHa_c212g00010.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
1,551 bp
Genomic location
unplaced_contig_212:1,924–3,760
Strand
+
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: hex-1 | Seed ortholog: 331657.A0A4U0WIA4 | COG: S | eggNOG OG: eIF-5a@131567|A-1, eIF-5a@2759|Ez-13
Gene Ontology
GO:0002119 nematode larval development; GO:0002181 cytoplasmic translation; GO:0003723 RNA binding; GO:0003746 translation elongation factor activity; GO:0005515 protein binding; GO:0005777 peroxisome; GO:0006414 translational elongation; GO:0007204 positive regulation of cytosolic calcium ion concentration; GO:0007276 gamete generation; GO:0007283 spermatogenesis; GO:0007618 mating; GO:0008104 intracellular protein localization; GO:0008150 biological_process; GO:0010666 positive regulation of cardiac muscle cell apoptotic process; GO:0017070 U6 snRNA binding; GO:0030428 cell septum; GO:0033209 tumor necrosis factor-mediated signaling pathway; GO:0035262 gonad morphogenesis; GO:0043065 positive regulation of apoptotic process; GO:0043066 negative regulation of apoptotic process; GO:0045138 nematode male tail tip morphogenesis; GO:0045901 positive regulation of translational elongation; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0051149 positive regulation of muscle cell differentiation; GO:0097067 cellular response to thyroid hormone stimulus; GO:0098586 cellular response to virus; GO:0140266 Woronin body; GO:1902255 positive regulation of intrinsic apoptotic signaling pathway by p53 class mediator; GO:2000379 positive regulation of reactive oxygen species metabolic process
KEGG
KO: K03263 | BRITE: 00001, 03012
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa_c212g00010.1-CDS-unplaced_contig_212-1787993825:1924..2004
part_of
CDSPaHa_c212g00010.1-CDS-unplaced_contig_212-1787993825:2099..2480
part_of
CDSPaHa_c212g00010.1-CDS-unplaced_contig_212-1787993825:2607..2910
part_of
CDSPaHa_c212g00010.1-CDS-unplaced_contig_212-1787993825:2977..3760
part_of
exonPaHa_c212g00010.1-exon-unplaced_contig_212-1787993825:1924..2004
part_of
exonPaHa_c212g00010.1-exon-unplaced_contig_212-1787993825:2099..2480
part_of
exonPaHa_c212g00010.1-exon-unplaced_contig_212-1787993825:2607..2910
part_of
exonPaHa_c212g00010.1-exon-unplaced_contig_212-1787993825:2977..3760
part_of