Feature identity
- Identifier
- PaHa_c199g00100.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,086 bp
- Genomic location
- unplaced_contig_199:17,602–18,801
- Strand
- +
Hass · mRNA
PaHa_c199g00100.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,086
- bp
- unplaced_contig_199:17,602–18,801
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c199g00100
- eggNOG
- Preferred name: CTF1 | Seed ortholog: 56484.A0A1Y2FJ54 | COG: S | eggNOG OG: Fungal_trans@131567|A-1*, Fungal_trans@2759|AM-7, Fungal_trans@4751|CRZ-29!, Zn_clus@131567|A-1*, Zn_clus@2759|EPE-28, Zn_clus@33154|GIX-30, Zn_clus@4751|UcM-39
- Gene Ontology
- GO:0000976 transcription cis-regulatory region binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0009062 fatty acid catabolic process; GO:0019626 short-chain fatty acid catabolic process; GO:0042758 long-chain fatty acid catabolic process; GO:0045944 positive regulation of transcription by RNA polymerase II
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c199g00100.1-protein
derives_fromgenePaHa_c199g00100
CDS
part_ofPaHa_c199g00100.1-CDS-unplaced_contig_199-1787993825:17602..17767CDS
part_ofPaHa_c199g00100.1-CDS-unplaced_contig_199-1787993825:17882..18801exon
part_ofPaHa_c199g00100.1-exon-unplaced_contig_199-1787993825:17602..17767exon
part_ofPaHa_c199g00100.1-exon-unplaced_contig_199-1787993825:17882..18801