Feature identity
- Identifier
- PaHa_c165g00020.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,706 bp
- Genomic location
- unplaced_contig_165:2,184–5,349
- Strand
- −
Hass · mRNA
PaHa_c165g00020.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,706
- bp
- unplaced_contig_165:2,184–5,349
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c165g00020
- eggNOG
- Preferred name: TAFV2401 | Seed ortholog: 348901.A0A2I0S334 | COG: S | eggNOG OG: LisH@131567|O-4, LisH@2759|Aj-7, TFIID_NTD2@131567|A-1*, TFIID_NTD2@2759|B-2!, WD40@131567|Uz-14, WD40@2759|EKW-24
- Gene Ontology
- GO:0000124 SAGA complex; GO:0003674 molecular_function; GO:0003682 chromatin binding; GO:0003713 transcription coactivator activity; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0005634 nucleus; GO:0005669 transcription factor TFIID complex; GO:0005829 cytosol; GO:0006325 chromatin organization; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006366 transcription by RNA polymerase II; GO:0006367 transcription initiation at RNA polymerase II promoter; GO:0008150 biological_process; GO:0016251 RNA polymerase II general transcription initiation factor activity; GO:0042802 identical protein binding; GO:0043130 ubiquitin binding; GO:0045815 transcription initiation-coupled chromatin remodeling; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0046695 SLIK (SAGA-like) complex; GO:0060090 molecular adaptor activity; GO:0140378 protein complex scaffold activity
- KEGG
- KO: K03130 | Pathway: 03022 | BRITE: 00001, 03021, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c165g00020.1-protein
derives_fromgenePaHa_c165g00020
CDS
part_ofPaHa_c165g00020.1-CDS-unplaced_contig_165-1787993825:2184..2513CDS
part_ofPaHa_c165g00020.1-CDS-unplaced_contig_165-1787993825:2834..4840CDS
part_ofPaHa_c165g00020.1-CDS-unplaced_contig_165-1787993825:4981..5349exon
part_ofPaHa_c165g00020.1-exon-unplaced_contig_165-1787993825:2184..2513exon
part_ofPaHa_c165g00020.1-exon-unplaced_contig_165-1787993825:2834..4840exon
part_ofPaHa_c165g00020.1-exon-unplaced_contig_165-1787993825:4981..5349