Feature identity
- Identifier
- PaHa_c162g00200.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 2,019 bp
- Genomic location
- unplaced_contig_162:20,515–22,702
- Strand
- −
Hass · mRNA
PaHa_c162g00200.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 2,019
- bp
- unplaced_contig_162:20,515–22,702
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c162g00200
- eggNOG
- Preferred name: sfc9 | Seed ortholog: 1168221.R7YUP0 | COG: S | eggNOG OG: TFIIIC_delta@2759|A-1, zf-TFIIIC@2759|A-1
- Gene Ontology
- GO:0000127 transcription factor TFIIIC complex; GO:0000995 RNA polymerase III general transcription initiation factor activity; GO:0005634 nucleus; GO:0006383 transcription by RNA polymerase III
- KEGG
- EC: ec:2.3.1.48, ec:3.2.1.50 | KO: K01205, K11310, K15207 | Pathway: 00531, 01100, 04142 | Module: M00078 | BRITE: 00001, 01000, 03021, 03036, 04147
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c162g00200.1-protein
derives_fromgenePaHa_c162g00200
CDS
part_ofPaHa_c162g00200.1-CDS-unplaced_contig_162-1787993825:20515..20711CDS
part_ofPaHa_c162g00200.1-CDS-unplaced_contig_162-1787993825:20787..21250CDS
part_ofPaHa_c162g00200.1-CDS-unplaced_contig_162-1787993825:21295..21445CDS
part_ofPaHa_c162g00200.1-CDS-unplaced_contig_162-1787993825:21496..22702exon
part_ofPaHa_c162g00200.1-exon-unplaced_contig_162-1787993825:20515..20711exon
part_ofPaHa_c162g00200.1-exon-unplaced_contig_162-1787993825:20787..21250exon
part_ofPaHa_c162g00200.1-exon-unplaced_contig_162-1787993825:21295..21445exon
part_ofPaHa_c162g00200.1-exon-unplaced_contig_162-1787993825:21496..22702