Feature identity
- Identifier
- PaHa_c158g00390.1
- Feature type
- mRNA
- Genome collection
- Hass
- Organism
- Persea americana-Hass
- Sequence length
- 1,212 bp
- Genomic location
- unplaced_contig_158:47,281–48,802
- Strand
- +
Hass · mRNA
PaHa_c158g00390.1
A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.
- 1,212
- bp
- unplaced_contig_158:47,281–48,802
- genomic location
Functional evidence
These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.
Functional index matched identifier: PaHa_c158g00390
- eggNOG
- Preferred name: TIGD6 | Seed ortholog: 383855.N1QAT8 | COG: COG2963 | eggNOG OG: CENP-B_N@131567|AC-7, HTH_Tnp_Tc5@131567|z-6, HTH_Tnp_Tc5@2759|Bt-8
- Gene Ontology
- GO:0003674 molecular_function; GO:0005515 protein binding; GO:0005575 cellular_component; GO:0007527 adult somatic muscle development; GO:0008150 biological_process; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0061629 RNA polymerase II-specific DNA-binding transcription factor binding; GO:0090263 positive regulation of canonical Wnt signaling pathway
- KEGG
- EC: ec:2.7.1.14 | KO: K11496 | Pathway: 00030, 01100 | BRITE: 00001, 03036
Biological context
Connected feature records
Follow parent–child relationships among genes, transcripts, coding regions, and protein products.
polypeptidePaHa_c158g00390.1-protein
derives_fromgenePaHa_c158g00390
CDS
part_ofPaHa_c158g00390.1-CDS-unplaced_contig_158-1787993825:47281..47521CDS
part_ofPaHa_c158g00390.1-CDS-unplaced_contig_158-1787993825:47641..47780CDS
part_ofPaHa_c158g00390.1-CDS-unplaced_contig_158-1787993825:47870..48076CDS
part_ofPaHa_c158g00390.1-CDS-unplaced_contig_158-1787993825:48179..48802exon
part_ofPaHa_c158g00390.1-exon-unplaced_contig_158-1787993825:47281..47521exon
part_ofPaHa_c158g00390.1-exon-unplaced_contig_158-1787993825:47641..47780exon
part_ofPaHa_c158g00390.1-exon-unplaced_contig_158-1787993825:47870..48076exon
part_ofPaHa_c158g00390.1-exon-unplaced_contig_158-1787993825:48179..48802