Hass · mRNA

PaHa_c142g00190.1

A connected PerseaDB feature record linking structure, functional evidence, sequences, and downstream analysis tools.

1,572
bp
unplaced_contig_142:27,023–28,844
genomic location
Record overview

Feature identity

Identifier
PaHa_c142g00190.1
Feature type
mRNA
Genome collection
Hass
Organism
Persea americana-Hass
Sequence length
1,572 bp
Genomic location
unplaced_contig_142:27,023–28,844
Strand
−
Open original Tripal record
Computational annotation

Functional evidence

These terms are computationally inferred by eggNOG-mapper and should not be interpreted as experimental validation in avocado.

eggNOG
Preferred name: TUP1 | Seed ortholog: 2082308.A0A2K1QUJ7 | COG: COG2319 | eggNOG OG: Tup_N@2759|A-1, WD40@131567|Bgy-21
Gene Ontology
GO:0000122 negative regulation of transcription by RNA polymerase II; GO:0000278 mitotic cell cycle; GO:0000785 chromatin; GO:0001217 DNA-binding transcription repressor activity; GO:0003674 molecular_function; GO:0003714 transcription corepressor activity; GO:0005515 protein binding; GO:0005634 nucleus; GO:0005737 cytoplasm; GO:0005829 cytosol; GO:0006357 regulation of transcription by RNA polymerase II; GO:0006972 hyperosmotic response; GO:0006974 DNA damage response; GO:0008150 biological_process; GO:0009267 cellular response to starvation; GO:0009372 quorum sensing; GO:0010914 positive regulation of sterigmatocystin biosynthetic process; GO:0017053 transcription repressor complex; GO:0030447 filamentous growth; GO:0030682 symbiont-mediated perturbation of host defenses; GO:0036033 mediator complex binding; GO:0036166 phenotypic switching; GO:0036170 filamentous growth of a population of unicellular organisms in response to starvation; GO:0036171 filamentous growth of a population of unicellular organisms in response to chemical stimulus; GO:0036180 filamentous growth of a population of unicellular organisms in response to biotic stimulus; GO:0042304 regulation of fatty acid biosynthetic process; GO:0042393 histone binding; GO:0042826 histone deacetylase binding; GO:0043941 positive regulation of sexual sporulation resulting in formation of a cellular spore; GO:0044114 development of symbiont in host; GO:0044182 filamentous growth of a population of unicellular organisms; GO:0044409 symbiont entry into host; GO:0045461 sterigmatocystin biosynthetic process; GO:0045827 negative regulation of isoprenoid metabolic process; GO:0045892 negative regulation of DNA-templated transcription; GO:0045944 positive regulation of transcription by RNA polymerase II; GO:0060258 negative regulation of filamentous growth; GO:0062040 fungal biofilm matrix; GO:0070791 cleistothecium development; GO:0071280 cellular response to copper ion; GO:0071466 cellular response to xenobiotic stimulus; GO:0080025 phosphatidylinositol-3,5-bisphosphate binding; GO:0097308 cellular response to farnesol; GO:0098609 cell-cell adhesion; GO:0160051 Cyc8(Ssn6)-Tup1 general repressor complex; GO:1900429 negative regulation of filamentous growth of a population of unicellular organisms; GO:2000879 negative regulation of dipeptide transport
KEGG
KO: K06666 | Pathway: 04011, 04111 | BRITE: 00001, 03021
Biological context

Connected feature records

Follow parent–child relationships among genes, transcripts, coding regions, and protein products.

CDSPaHa_c142g00190.1-CDS-unplaced_contig_142-1787993825:27023..27778
part_of
CDSPaHa_c142g00190.1-CDS-unplaced_contig_142-1787993825:27825..28162
part_of
CDSPaHa_c142g00190.1-CDS-unplaced_contig_142-1787993825:28322..28668
part_of
CDSPaHa_c142g00190.1-CDS-unplaced_contig_142-1787993825:28714..28844
part_of
exonPaHa_c142g00190.1-exon-unplaced_contig_142-1787993825:27023..27778
part_of
exonPaHa_c142g00190.1-exon-unplaced_contig_142-1787993825:27825..28162
part_of
exonPaHa_c142g00190.1-exon-unplaced_contig_142-1787993825:28322..28668
part_of
exonPaHa_c142g00190.1-exon-unplaced_contig_142-1787993825:28714..28844
part_of